Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5862 250 3e-61 seq24165 246 4e-60 seq24166 206 4e-48 seq663 185 1e-41 seq310 176 6e-39 seq35896 172 8e-38 >seq5862 Length=2677 Score = 250 bits (276), Expect = 3e-61 Identities = 393/559 (70%), Gaps = 14/559 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| ||||| |||||||||||||| || || ||||| || || ||| Sbjct 1882 GCAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAG 1823 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || |||||||| || | ||| || |||||||| |||| | || ||| | || || |||| Sbjct 1822 GCCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGA 1764 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA------- 39787 |||| || || || || || ||||| || | |||||| | || |||||| Sbjct 1763 AGATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAG-GAAA--TGTATCTGCGCCAG 1707 Query 39788 --TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 || | ||||| | | ||||| |||||||||||||| || |||||| ||||| | Sbjct 1706 CCTTTTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGA 1647 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | ||||| ||||| || || || || || || || || || ||||| || || Sbjct 1646 TGGCATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCG 1587 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||||||| || || ||||| ||||| || |||||||| ||||| || || | || | Sbjct 1586 AATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCT 1527 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 ||| ||| || ||||| | || | | ||||| || ||| |||| || |||||| Sbjct 1526 CAGGAATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAG 1467 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT 40085 || ||||| || ||||||||| || ||||| | ||| ||||| | || | | Sbjct 1466 ACGCAGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGT 1407 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 |||| | |||| ||| | | ||||| || || ||||||||||| || ||||| | Sbjct 1406 TCCAATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAG 1347 Query 40146 CCTTTTTGTACATGTTCCA 40164 ||||||||||||| | ||| Sbjct 1346 CCTTTTTGTACATCTCCCA 1328 >seq24165 Length=2677 Score = 246 bits (272), Expect = 4e-60 Identities = 391/559 (70%), Gaps = 14/559 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 2316 GCAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 2257 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA-GAAAAGA 39734 || ||||| || || | ||| ||||||||||| |||| | || ||| ||| || |||| Sbjct 2256 GCCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGA 2198 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA------- 39787 |||| || || || || || ||||| || | |||||| | | |||||| Sbjct 2197 AGATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAA---TGTATCTGCGCCAG 2141 Query 39788 --TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 || | ||||| || | ||||| |||||||||||||| ||| |||||| ||||| | Sbjct 2140 CCTTTTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGA 2081 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | ||||| ||||| || || || | || || || || || ||||| || || Sbjct 2080 TGGCATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCG 2021 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||||||| || || ||||| ||||| || |||||||| ||||| || || | || | Sbjct 2020 AATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCT 1961 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 ||| || || ||||| | || | | ||||| || ||| |||| || |||||| Sbjct 1960 CAGGGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAG 1901 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT 40085 || ||||| || ||||||||| ||| ||||| | ||| ||||| | || | | Sbjct 1900 ATGCAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGT 1841 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 |||| | ||| ||| | | ||||| || || ||||||||||| || ||||| | Sbjct 1840 TCCAATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAG 1781 Query 40146 CCTTTTTGTACATGTTCCA 40164 ||||||||||||| | ||| Sbjct 1780 CCTTTTTGTACATCTCCCA 1762 >seq24166 Length=499 Score = 206 bits (228), Expect = 4e-48 Identities = 344/495 (69%), Gaps = 14/495 (3%) Strand=Plus/Minus Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA-GAAAAGAAGAT 39738 ||||| || || | ||| ||||||||||| |||| | || ||| ||| || |||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAAGAT 439 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---------TT 39789 || || || || || ||||| || | |||||| | | |||||| || Sbjct 438 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAA---TGTATCTGCGCCAGCCTT 382 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || | ||||| |||||||||||||| ||| |||||| ||||| || || Sbjct 381 TTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGC 322 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| ||||| || || || | || || || || || ||||| || || ||| Sbjct 321 ATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 262 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || ||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 261 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 202 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| | || | | ||||| || ||| |||| || |||||| || Sbjct 201 GATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGC 142 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||| || ||||||||| ||| ||||| | ||| ||||| | || | ||||| Sbjct 141 AGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 82 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 | ||| ||| | | ||||| || || ||||||||||| || ||||| ||||| Sbjct 81 ATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 22 Query 40150 TTTGTACATGTTCCA 40164 ||||||||| | ||| Sbjct 21 TTTGTACATCTCCCA 7 >seq663 Length=3190 Score = 185 bits (204), Expect = 1e-41 Identities = 475/719 (66%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 ||||| |||| || ||| || |||||| ||||||| || | | || || Sbjct 2065 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTGGTGCC 2006 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 ||||| || || | || |||||| | | | ||| |||| | ||||||||||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 69616 GGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttt 69674 || | ||| ||||| ||| ||||||||||||| || | ||||| || || || || Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 69675 tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGAC 69734 ||| || || || ||||| | || || | ||||| || || ||||| || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 69735 TCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAG 69794 |||| || || || || ||||||| ||| | || |||| || || |||| || Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCG 69852 ||| ||||| | ||| || ||| | || || || || || || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA--GCA 1709 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 ||||| || | | |||||||||||||| || | || || || | |||||| || Sbjct 1708 CGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGT 1649 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | |||||||||||| || |||||||| || ||| |||||||| ||||| || | Sbjct 1648 TTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAA 1589 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | || | | || || ||||| || | ||| |||| || ||||||||| | Sbjct 1588 GAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGT 1529 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCT 70092 | || || | |||||| ||||| || | | | | || || | ||| | ||| Sbjct 1528 TGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAGTTTTATGCAGTCCC 1469 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152 | || || ||||||||||| || || |||| ||| || | || || | ||| || Sbjct 1468 ACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAATTTGAAG 1409 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || || |||| || || || |||||||| || | ||||| ||||| || Sbjct 1408 AGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATTAAAGAGGAAGTCCCTTTCATA 1350 >seq310 Length=11085 Score = 176 bits (194), Expect = 6e-39 Identities = 473/719 (66%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 ||||| |||| || ||| || |||||| ||||||| || | | || || Sbjct 1307 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTGGTGCC 1366 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 ||||| || || | || |||||| | | | ||| |||| | ||| || |||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 69616 GGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttt 69674 || | ||| ||||| ||| ||||||||||||| || | ||||| || || || || Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 69675 tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGAC 69734 ||| || || | |||||| | || || | ||||| || || ||||| || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 69735 TCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAG 69794 |||| || || || || ||||||| ||| | || |||| || || |||| || Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCG 69852 ||| ||||| | ||| || || | || || || || || || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA--GCA 1663 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 ||||| || | | |||||||||||||| || | || || || | |||||| || Sbjct 1664 CGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGT 1723 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | |||||||||||| || |||||||| || ||| |||||||| ||||| || | Sbjct 1724 TTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAA 1783 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | || | | || || ||||| || | ||| |||| || ||||||||| | Sbjct 1784 GAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGT 1843 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCT 70092 | || || | |||||| ||||| || | | | | || || | ||| | |||| Sbjct 1844 TGTTGGGAGATCAGATTATATGTCTCCAACACCGCTCTGATGTCAGTTTTATGCAGTCCT 1903 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152 | || || ||||||||||| || || || | ||| || | || || | ||| || Sbjct 1904 ACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTTGAAG 1963 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || || |||| || || || |||||||| || | ||||||||||| || Sbjct 1964 AGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTCATA 2022 >seq35896 Length=749 Score = 172 bits (190), Expect = 8e-38 Identities = 258/363 (71%), Gaps = 14/363 (4%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| ||||| |||||||||||||| || || ||||| || || ||| Sbjct 360 GCAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAG 301 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || |||||||| || | ||| || |||||||| |||| | || ||| | || || |||| Sbjct 300 GCCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGA 242 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA------- 39787 |||| || || || || || ||||| || | |||||| | || |||||| Sbjct 241 AGATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAG-GAAA--TGTATCTGCGCCAG 185 Query 39788 --TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 || | ||||| | | ||||| |||||||||||||| || |||||| ||||| | Sbjct 184 CCTTTTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGA 125 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | ||||| ||||| || || || || || || || || || ||||| || || Sbjct 124 TGGCATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCG 65 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||||||| || || ||||| ||||| || |||||||| ||||| || || | || | Sbjct 64 AATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCT 5 Query 39966 CAG 39968 ||| Sbjct 4 CAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686414277182160