Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5862 150 1e-31 seq24165 147 2e-30 seq24166 131 1e-25 seq35896 105 5e-18 >seq5862 Length=2677 Score = 150 bits (166), Expect = 1e-31 Identities = 396/593 (67%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | | || | | ||| | ||||||||||| || |||| Sbjct 1295 TTTGTGCTGTTTCCCATCCGCCACCAACGCGTTTGGGAGATGTACAAAAAGGCTGAGGCC 1354 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATT 43818 || ||||||||||| || || || || | || || | | | ||||||| | | Sbjct 1355 TCCTTTTGGACAGCCGAGGAGGTAGACCTTGCTTCTGA-TCACAATCATTGGAACTCTCT 1413 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | || | || ||||| |||||| | || ||||| || ||||||||| || || Sbjct 1414 CACCGCAGATGAGAAACACTTTATAAAGTCTGTATTGGCCTTCTTTGCTGCGTCTGATGG 1473 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | |||| || | || ||||| | || || || || Sbjct 1474 CATTGTGACTGAGAACTTGGCTGGTCGCTTCATGACCGAGGTTCAGATTCCTGAGGCTCG 1533 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| || ||||| || || ||||| ||||||||||| || | Sbjct 1534 CTGCTTCTACGGCTTTCAGATCGCCATTGAGAACATTCACTCGGAAATGTATTCGCTCTT 1593 Query 43999 GATAGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 |||||| || ||| | || || ||| |||||| |||| | || ||||| || |||| Sbjct 1594 GATAGACACTTACGTGAAGGACCCTGCA-GAGAAGGATCGCCTCTTCAATGCCATCGAAA 1652 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA----TTCAA 44111 | || ||| || | || | ||||| || |||||||| | |||||| ||| | Sbjct 1653 CGGTGCCTTCGGTCAAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGAAAAGGCTGGCG 1712 Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 ||| | ||| || || | || || || || | |||||| || || ||||| || | Sbjct 1713 CAGATACATTTCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCGG 1772 Query 44172 G-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 | | | | || |||| |||||| | ||||| | || | ||||| || | | | Sbjct 1773 GTAGCTTCTG-TTCCATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCT--CTGCT 1829 Query 44231 TCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||| ||||| || || || | ||||| ||| | |||||||| ||||| ||| Sbjct 1830 TCAGCAATGAATTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGC 1882 >seq24165 Length=2677 Score = 147 bits (162), Expect = 2e-30 Identities = 399/597 (67%), Gaps = 24/597 (4%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | | || | | ||| | ||||||||||| || |||| Sbjct 1729 TTTGTGCTGTTTCCCATCCGCCACCAACGCGTTTGGGAGATGTACAAAAAGGCTGAGGCC 1788 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGCATT 43818 || ||||||||||| || || || || | || || | | || |||||| | | Sbjct 1789 TCCTTTTGGACAGCCGAGGAGGTAGACCTTGCTTCTGA-TCACAACCATTGGAACTCTCT 1847 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | || | || ||||| |||||| | || ||||| || |||||||| || || Sbjct 1848 CACCGCAGATGAGAAACACTTTATAAAATCTGTATTGGCCTTCTTTGCTGCATCTGATGG 1907 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | |||| || | || ||||| | || || || || Sbjct 1908 CATTGTGACTGAGAACTTGGCTGGTCGCTTCATGACCGAGGTTCAGATCCCTGAGGCTCG 1967 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| || ||||| || || ||||| ||||||||||| || | Sbjct 1968 CTGCTTCTACGGCTTTCAGATCGCCATTGAGAACATTCACTCGGAAATGTATTCGCTCTT 2027 Query 43999 GATAGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 |||||| || ||| | || || ||| |||||| |||| | || ||||| || |||| Sbjct 2028 GATAGACACTTACGTGAAGGACCCAGCA-GAGAAGGATCGCCTCTTCAATGCCATCGAAA 2086 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA-------TT 44108 | || ||| | | || | ||||| || |||||||| |||||||| ||| Sbjct 2087 CGGTGCCTTCTGTCAAGAAGAAAGCTGAATGGGCCCTCAAATGGATTGAAAAGGCTGGCG 2146 Query 44109 CAAAT-GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 || || |||| | |||| || | || || || || | |||||| || || ||||| Sbjct 2147 CAGATACATTCCCT--GAGA--GATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTC 2202 Query 44168 TC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || ||| | | || |||| |||||| | ||||| | || | ||||| || | | Sbjct 2203 TCGGGGAGCTTCTG-TTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCAGGCCT--C 2259 Query 44227 GTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| |||||||| || || | ||||| ||| | |||||||| ||||| ||| Sbjct 2260 TGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGC 2316 >seq24166 Length=499 Score = 131 bits (144), Expect = 1e-25 Identities = 256/373 (69%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 43733 TGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACT 43792 ||| | ||||||||||| || |||| || ||||||||||| || || || || | || Sbjct 7 TGGGAGATGTACAAAAAGGCTGAGGCCTCCTTTTGGACAGCCGAGGAGGTAGACCTTGCT 66 Query 43793 AAAGACTTAGCAC-ATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGT 43851 || | | || |||||| | | | || | || ||||| |||||| | || Sbjct 67 TCTGA-TCACAACCATTGGAACTCTCTCACCGCAGATGAGAAACACTTTATAAAATCTGT 125 Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 ||||| || |||||||| || || || || | ||| || |||| | |||| || Sbjct 126 ATTGGCCTTCTTTGCTGCATCTGATGGCATTGTGACTGAGAACTTGGCTGGTCGCTTCAT 185 Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 | || ||||| | || || || || || || || || ||||| || ||||| || || Sbjct 186 GACCGAGGTTCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTTCAGATCGCCATTGAGAA 245 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-TGGGCACGAGA 44030 ||||| ||||||||||| || ||||||| || ||| | || || ||| |||| Sbjct 246 CATTCACTCGGAAATGTATTCGCTCTTGATAGACACTTACGTGAAGGACCCAGCA-GAGA 304 Query 44031 AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGG 44090 || |||| | || ||||| || ||||| || ||| | | || | ||||| || |||| Sbjct 305 AGGATCGCCTCTTCAATGCCATCGAAACGGTGCCTTCTGTCAAGAAGAAAGCTGAATGGG 364 Query 44091 CCCTTAAATGGAT 44103 |||| |||||||| Sbjct 365 CCCTCAAATGGAT 377 >seq35896 Length=749 Score = 105 bits (116), Expect = 5e-18 Identities = 247/364 (68%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 || || || || || || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 1 CCTGAGGCTCGCTGCTTCTACGGCTTTCAGATCGCCATTGAGAACATTCACTCGGAAATG 60 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAA 44046 || || ||||||| || ||| | || || ||| |||||| |||| | || || Sbjct 61 TATTCGCTCTTGATAGACACTTACGTGAAGGACCCTGCA-GAGAAGGATCGCCTCTTCAA 119 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--A 44104 ||| || ||||| || ||| || | || | ||||| || |||||||| | |||||| | Sbjct 120 TGCCATCGAAACGGTGCCTTCGGTCAAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGA 179 Query 44105 AA----TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 || | ||| | ||| || || | || || || || | |||||| || || Sbjct 180 AAAGGCTGGCGCAGATACATTTCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTAT 239 Query 44161 TTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTG 44219 ||||| || || | | | || |||| |||||| | ||||| | || | ||||| | Sbjct 240 CTTCTTCTCGGGTAGCTTCTG-TTCCATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAG 298 Query 44220 GGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 | | | |||| ||||| || || || | ||||| ||| | |||||||| ||||| Sbjct 299 GCCT--CTGCTTCAGCAATGAATTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGC 356 Query 44278 TTGC 44281 ||| Sbjct 357 CTGC 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397177014951970