Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq663 178 2e-39 seq310 165 1e-35 seq24165 132 6e-26 seq5862 104 3e-17 seq35896 95.1 2e-14 >seq663 Length=3190 Score = 178 bits (196), Expect = 2e-39 Identities = 501/761 (66%), Gaps = 15/761 (2%) Strand=Plus/Minus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 |||| ||| | |||||| ||||| | |||||||| | ||| || || | | || || Sbjct 2249 TGTGAACTGGACAATTTCGGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGATG 2190 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||||| || ||||||||||| || || || || ||||| | || Sbjct 2189 GTTGGATTTCGCGTTGCAGTGGTCTTTGTAGAGCATATAAGGAGTACCAGTCTCTATTTG 2130 Query 111397 TGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCT 111455 | | | ||||| ||||| || ||| ||| || ||| |||| |||| Sbjct 2129 AGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTTG-CCCGGCCCT 2071 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | ||| || |||||| || | ||||| || | ||| | ||| ||||||| Sbjct 2070 CGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTG 2011 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 |||||| | || || || || ||||| | || || |||| || | || ||| || | Sbjct 2010 GTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATA 1951 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 | || || | |||||| | | ||||||||||| || |||||| | || |||| Sbjct 1950 GATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGT 1891 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | | ||| |||||||| | ||| ||||||||||| ||||| ||||||| ||| | Sbjct 1890 TCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAA 1831 Query 111696 TAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 | |||||||| | ||| |||||| ||| ||||| |||||| |||| | || | Sbjct 1830 ATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTC 1771 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATT 111810 | | ||||||||| | ||| | ||| || || || |||| || |||||| ||| Sbjct 1770 GCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAG--TTAGC 1713 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 || | | | || | | || || || || || | ||| || || ||||| Sbjct 1712 AGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACA 1653 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC---CTTGTTGGCGATAAGGAA 111927 || |||| || |||| || || | || ||| || | |||| || || || Sbjct 1652 CTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG---AGAAA 1596 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 ||| || | ||| |||||||| || ||||||||||| || || || || || ||| | Sbjct 1595 GCACGAAGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGT 1536 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAG 112028 ||||| |||||| ||| | ||||||||||| |||| Sbjct 1535 GAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAG 1495 >seq310 Length=11085 Score = 165 bits (182), Expect = 1e-35 Identities = 497/759 (65%), Gaps = 15/759 (2%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 |||| ||| | |||||| ||||| | |||||||| | ||| || || | | || || Sbjct 1123 TGTGAACTGGACAATTTCAGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGATG 1182 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||||| |||||||||||||| || || || || ||||| | || Sbjct 1183 GTTGGATTTCGCGTTGCAGTGGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCTATTTG 1242 Query 111397 TGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCT 111455 | | | ||||| ||||| || ||| ||| || ||| |||| |||| Sbjct 1243 GGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTTG-CCCGGCCCT 1301 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | ||| || |||||| || | ||||| || | ||| | ||| ||||||| Sbjct 1302 CGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTG 1361 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 |||||| | || || || || ||||| | || || |||| || | || |||||| | Sbjct 1362 GTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACA 1421 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 | || || | |||||| | | ||||||||||| || |||||| | || |||| Sbjct 1422 GATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGT 1481 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | | ||| | ||||| | ||| ||||||||||| ||||| ||||||| ||| | Sbjct 1482 TCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAA 1541 Query 111696 TAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 | |||||||| | ||| |||||| ||| ||||| |||||| |||| | || | Sbjct 1542 ATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTC 1601 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATT 111810 | | ||||||||| | ||| | || || || || |||| || |||||| ||| Sbjct 1602 GCAACATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAG--TTAGC 1659 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 || | | | || | | || || || || || | ||| || || ||||| Sbjct 1660 AGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACA 1719 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC---CTTGTTGGCGATAAGGAA 111927 || |||| || |||| || || | || ||| || | |||| || || || Sbjct 1720 CTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG---AGAAA 1776 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 ||| || | ||| || ||||| || ||||||||||| || || || || || ||| | Sbjct 1777 GCACGAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGT 1836 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 ||||| |||||| ||| | ||||||||||| || Sbjct 1837 GAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACAC 1875 >seq24165 Length=2677 Score = 132 bits (146), Expect = 6e-26 Identities = 363/545 (67%), Gaps = 21/545 (4%) Strand=Plus/Minus Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 |||| |||| |||||||||| | | |||| ||| | |||||| || |||||| | | Sbjct 2480 TCCGCCACAAACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 2421 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 122609 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 2420 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 2361 Query 122610 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | |||| | | |||| || ||| || | | || ||| || |||||| || Sbjct 2360 GGAATATTCG-TGGACGGTCGGTTGACGAGCATGCTGTAGAGGAGG--CA-GGCAAAGTC 2305 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 || || |||||||||| | || | ||||| |||||| || ||||||||||| Sbjct 2304 GCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCATGAG 2245 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 |||| |||||| | |||| | || | ||||| ||| |||||||||||||||||||| Sbjct 2244 GCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTCCAC 2185 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAA------GGAGCGAGACTTTGCATCAAACCA 122840 | || || || | | | || | ||| | || || |||| |||| ||| Sbjct 2184 AGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT---TCAATCCA 2128 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 ||| | ||||||| || ||||||| | | | || || |||| |||||| | || | Sbjct 2127 TTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAG 2068 Query 122901 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCC 122960 | | ||| || | | ||||| | ||| |||| ||||| ||||| |||| Sbjct 2067 GCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGA 2008 Query 122961 ATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 |||| | ||| ||||| || ||| | ||||||| |||| || || |||||| Sbjct 2007 GTGAATGTTCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGA 1950 Query 123019 ACCTC 123023 ||||| Sbjct 1949 ACCTC 1945 >seq5862 Length=2677 Score = 104 bits (114), Expect = 3e-17 Identities = 410/634 (65%), Gaps = 21/634 (3%) Strand=Plus/Minus Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 |||| |||| |||||||||| | |||| ||| | |||||| || |||||| | | Sbjct 2046 TCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 1987 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 122609 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 1986 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 1927 Query 122610 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | || | | | |||| || ||| || | | | ||| || |||||| || Sbjct 1926 GGAATATTAG-TGGATGGTCGGTTGACGAGCATGCTGTATAGGAGG--CA-GGCAAAGTC 1871 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 || || |||||||||| | || | |||||| |||||| || |||||||| || Sbjct 1870 GCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTAG 1811 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 |||| |||||| | |||| | || | ||||| || |||||||||||||||||||| Sbjct 1810 GCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCAC 1751 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAA------GGAGCGAGACTTTGCATCAAACCA 122840 | || || || | | | || | || | || || |||| |||| ||| Sbjct 1750 AGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT---TCAATCCA 1694 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 | | | ||||||| || ||||||| | | || || |||| |||||| | || | Sbjct 1693 TCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCATTGAAGAG 1634 Query 122901 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCC 122960 | | ||| || | ||||| | ||| |||| ||||| ||||| |||| Sbjct 1633 GCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGA 1574 Query 122961 ATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 |||| | ||| ||||| || ||| | ||||||| |||| || || |||||| Sbjct 1573 GTGAATGTTCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAATCTGA 1516 Query 123019 ACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 123078 ||||| | || | | |||||| ||||| ||||| ||| |||||||| Sbjct 1515 ACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCAGCAAAG 1456 Query 123079 AATGCCAGGATGTACTTTATGAATTTCTTTTCAT 123112 || |||| | ||||||| || | || |||| Sbjct 1455 AAGGCCAATACAGACTTTATAAAGTGTTTCTCAT 1422 >seq35896 Length=749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 206/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 |||| |||| |||||||||| | |||| ||| | |||||| || |||||| | | Sbjct 524 TCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 465 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 122609 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 464 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 405 Query 122610 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | || | | | |||| || ||| || | | | ||| || |||||| || Sbjct 404 GGAATATTAG-TGGATGGTCGGTTGACGAGCATGCTGTATAGGAGG--CA-GGCAAAGTC 349 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 || || |||||||||| | || | |||||| |||||| || |||||||| || Sbjct 348 GCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTAG 289 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 |||| |||||| | |||| | || | ||||| || |||||||||||||||||||| Sbjct 288 GCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCAC 229 Query 122787 A 122787 | Sbjct 228 A 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627579864062400