Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq310 168 8e-37 seq663 138 1e-27 seq24165 98.7 1e-15 >seq310 Length=11085 Score = 168 bits (186), Expect = 8e-37 Identities = 913/1431 (64%), Gaps = 35/1431 (2%) Strand=Plus/Plus Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||| || || || | | |||| || |||||||||| |||||| |||||||||||||| Sbjct 526 AAAGTCTCCGGCCAAGATGCGCCTTGTGTAGATATTGGACGTGTAGGGCTCAAAGCACTC 585 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||| |||| || |||| || || || || ||||| || || | || | ||| || Sbjct 586 ATTGTTTCCCAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGCGCGACAAGTAAGCTATT 645 Query 118274 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT 118333 || ||||| | ||| ||||| | ||||||| | |||| || | | || Sbjct 646 TCGCAGACCGTGCTCCACAATGCTTGCCTTGAGGGACGCCCAATCCCAACGGGAGGATGG 705 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 ||| | | |||||| |||||||| || | ||||| | || || || || ||||||| Sbjct 706 CTCGACATTCCACATGTCAAACTGAAGTAGACCTTTGCTCGTGGGAGAGCCGGCAAATGT 765 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACA 118452 || || || | ||| |||| || || | | |||||| || || | Sbjct 766 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCATTAGATGATGT-GAGGGCGGCAAAGTAGA 824 Query 118453 TTGTTTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 |||| ||||||||| || | || | || ||||| ||| || | | | || Sbjct 825 TTGTCTCAAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGC 883 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | | || || || || || || || || || || |||||||| || | || | | Sbjct 884 AAGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGGCCAATGGGCCTGTGGCGTCTG 943 Query 118572 TTAGACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || || | | || ||| | | || || | || || || ||| | || | || Sbjct 944 TTGGAGTGCTCGGCT-TCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTGTTCAAGTT 1002 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 ||||| ||||| | ||| ||||| || | |||||| | |||| | Sbjct 1003 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATTTTCTCCTT 1062 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA-- 118748 | ||| | || || | || ||||| || ||||||||||| || | | || || Sbjct 1063 GTCCACAAATTTGGGCAAAGCCATTGAAGCAAGATTACACAC---GGCCACTTCTTTGGG 1119 Query 118749 TCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | ||| ||| | |||||| || || | ||| |||| | ||||||||| | || || Sbjct 1120 TGATGTGAACTGGACAATTTCAGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTG 1179 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || || || | ||| || |||||||| ||||| || || || || ||||| | Sbjct 1180 ATGGTTGGATTTCGCGTTGCAGTGGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCTAT 1239 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAGTG-GCGTTGGCTC 118923 ||||| || | ||||| ||| | || ||| || | |||| || ||| | | Sbjct 1240 TTGGGCCTCCAAGATAGCAAACCAAAGCTCTTGGGC--CTTG-ACAGCACGCCTTGCC-C 1295 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACG-GCCTCTGA 118981 | ||||| ||| || |||||| || | ||||| || | ||| || | || ||| Sbjct 1296 GGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCT-TGA 1354 Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || |||||||||| || ||||| || || ||||| | || || |||| || | || Sbjct 1355 -AGACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTC 1413 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCA 119099 |||||| || || || | ||| || || |||||||||| | || ||| ||||| Sbjct 1414 CATGAACAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTG--GCTCGCTGCTCTTCC 1471 Query 119100 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 119159 | || || || || ||||||||| || | ||| ||||||||||| || ||||| Sbjct 1472 TTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGA 1531 Query 119160 TACACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCG 119216 || | || | || ||||| | | |||| | || | ||| || | || ||| || Sbjct 1532 TAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCG 1591 Query 119217 TTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATAC 119274 || | || || | ||||||||| | ||| | ||| ||| || || |||| || ||| Sbjct 1592 TTGTACACTCGCAACATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTAC 1651 Query 119275 GAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 119334 ||| ||| || | | | ||| | | ||| || || || || | ||| || | Sbjct 1652 GAG--TTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAA 1709 Query 119335 TTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 119394 | || |||| | || || | || ||||| || || ||| | | | | Sbjct 1710 TCAAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAA 1769 Query 119395 TGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCG 119454 ||| ||||| || | || ||||| || || ||||| ||||| || || || || | Sbjct 1770 CGAGAAAGCACGAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGG 1829 Query 119455 CGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 | || |||||| |||||| ||| | || |||||||| || || ||||| Sbjct 1830 CATGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACCGCTCTGATGTCAG 1889 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 || | || | | || ||||| ||||||| |||||| |||||| Sbjct 1890 TTTTATGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCA 1940 >seq663 Length=3190 Score = 138 bits (152), Expect = 1e-27 Identities = 906/1431 (63%), Gaps = 35/1431 (2%) Strand=Plus/Minus Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||| || || || | | |||| || ||||| |||| ||||| |||||||||||||| Sbjct 2846 AAAGTCTCCGGCCAAGATGCGCCTTGTGTAGATGTTGGAAGTGTAGGGCTCAAAGCACTC 2787 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||| |||| || |||| || || || || ||||| ||||| | || | ||| || Sbjct 2786 ATTGTTTCCCAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCGACAAGTAAGCTATT 2727 Query 118274 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT 118333 || || || | ||| ||||| | ||||||| | |||| || | | || Sbjct 2726 TCGCAGGCCGTGCTCCACAATGCTTGCCTTGAGGGACGCCCAATCCCAACGGGAGGATGG 2667 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 ||| | | ||||||||||||||| || | ||||| | || || || || ||||||| Sbjct 2666 CTCAACATTCCACATATCAAACTGAAGAAGACCTTTGCTCGAGGGAGAGCCGGCAAATGT 2607 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACA 118452 || || || | ||| |||| || || | | |||||| || || | Sbjct 2606 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCATTAGATGATGT-GAGGGCGGCAAAGTAGA 2548 Query 118453 TTGTTTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 |||| ||||||||| || | || | || ||||| || ||| | | | || Sbjct 2547 TTGTCTCAAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCACTATCCCAAGGCATGCGC 2489 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | | || || || || || || || || || || || ||||| || | || | | Sbjct 2488 AAGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGACCAATGGGCCTGTGACGTCTG 2429 Query 118572 TTAGACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || || | | || ||| | | || || | || || || ||| | || | || Sbjct 2428 TTGGAGTGCTCGGCT-TCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTGTTCAAGTT 2370 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 ||||| ||||| | ||| ||||| || | |||||| | |||| | Sbjct 2369 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATTTTCTCCTT 2310 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA-- 118748 | ||| | ||||| | || ||||| || |||||||| || || | | || || Sbjct 2309 GTCCACAAATTTAGGCAAAGCCATTGAAGCAAGATTACATAC---GGCCACTTCTTTGGG 2253 Query 118749 TCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | ||| ||| | |||||| || || | ||| |||| | ||||||||| | || || Sbjct 2252 TGATGTGAACTGGACAATTTCGGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTG 2193 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || || || | ||| || || ||||| ||||| || || || || ||||| | Sbjct 2192 ATGGTTGGATTTCGCGTTGCAGTGGTCTTTGTAGAGCATATAAGGAGTACCAGTCTCTAT 2133 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAGTG-GCGTTGGCTC 118923 ||| | || | ||||| ||| | || ||| || | |||| || ||| | | Sbjct 2132 TTGAGCCTCCAAGATAGCAAACCAAAGCTCTTGGGC--CTTG-ACAGCACGCCTTGCC-C 2077 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACG-GCCTCTGA 118981 | ||||| ||| || |||||| || | ||||| || | ||| || | || ||| Sbjct 2076 GGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCT-TGA 2018 Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || |||||||||| || ||||| || || ||||| | || || |||| || | || Sbjct 2017 -AGACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTC 1959 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCA 119099 ||| || || || || | ||| || || |||||||||| | || ||| ||||| Sbjct 1958 CATAAATAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTG--GCTCGCTGCTCTTCC 1901 Query 119100 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 119159 | || || || || ||||| || || | ||| ||||||||||| || ||||| Sbjct 1900 TTGCCGTGGTTCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGA 1841 Query 119160 TACACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCG 119216 || | || | || ||||| | | |||| | || | ||| || | || ||| || Sbjct 1840 TAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCG 1781 Query 119217 TTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATAC 119274 || | || || | ||||||||| | ||| | |||| || || || |||| || ||| Sbjct 1780 TTGTACACTCGCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTAC 1721 Query 119275 GAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 119334 ||| ||| || | | | ||| | | ||| || || || || | ||| || | Sbjct 1720 GAG--TTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAA 1663 Query 119335 TTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 119394 | || |||| | || || | || ||||| || || ||| | | | | Sbjct 1662 TCAAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAA 1603 Query 119395 TGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCG 119454 ||| ||||| || | || || || || || ||||| ||||| || || || || | Sbjct 1602 CGAGAAAGCACGAAGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGG 1543 Query 119455 CGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 | || |||||| |||||| ||| | || |||||||| || || ||||| Sbjct 1542 CATGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAG 1483 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 || | || | | || ||||| ||||||| ||||||| |||||| Sbjct 1482 TTTTATGCAGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCA 1432 >seq24165 Length=2677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 442/690 (64%), Gaps = 29/690 (4%) Strand=Plus/Minus Query 129858 ACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGT 129917 |||||||||| | |||| ||||| |||||| || |||||| | ||| || | | Sbjct 2470 ACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCAACTGGAAGAGACT 2411 Query 129918 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT---GGCGTGAATGGTCT 129974 | | | ||| |||||||||| |||||||| ||| | ||| || | |||| || Sbjct 2410 CTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTGGGAATATTC- 2352 Query 129975 CCGTGCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGA 130031 ||| |||| ||| ||| | | || ||| || |||||| || || | Sbjct 2351 --GTGGACGGTCGGTTGACGAGCATGCTGTAGAGGAGG--CA-GGCAAAGTCGCAATGAA 2297 Query 130032 GACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCT 130091 | ||||| || | | ||| | ||||| |||||| || ||||||||||| |||| || Sbjct 2296 GGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCATGAGGCCCCTCT 2237 Query 130092 TCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGA 130151 |||| | ||| || || | ||| || || ||||||||||| ||||||||| |||| Sbjct 2236 TCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTCCACAGCGGCGA 2177 Query 130152 ACGCAAAGAGACGCTCAGCAAA------GGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 | || | | | ||||| || | || | |||| |||| ||| || | | Sbjct 2176 ATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT---TCAATCCATTTGAGGG 2120 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 |||| | || || |||| || | | || || || | ||| || | ||||| | || Sbjct 2119 CCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAGGCGATCCT 2060 Query 130266 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCA 130325 | |||| ||| || || | ||| | ||||| | ||||| |||| || | Sbjct 2059 TCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGAGTGAATGT 2000 Query 130326 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC-AT 130382 | ||| ||||| |||| | ||||||| |||| || || ||||| ||||| | Sbjct 1999 TCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGAACCTCGGT 1942 Query 130383 C-TGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | || || | | |||||| ||||| ||||| || ||||||| || ||| Sbjct 1941 CATG--AAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAGCAAAGAAGGCC 1884 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 130501 | | | | ||||| || | | |||| || | || | ||||| | || |||| Sbjct 1883 AATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAATGGTTGTGATCA 1824 Query 130502 TTCGAGAGATCTACCTCCTCCGCAGTCCAA 130531 | || ||||||||||| || |||||| Sbjct 1823 GAAGCAAGGTCTACCTCCTCGGCTGTCCAA 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617989973038640