Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5862 149 7e-31 seq24165 136 4e-27 seq35896 129 6e-25 seq310 113 5e-20 seq663 111 2e-19 seq24166 107 2e-18 >seq5862 Length=2677 Score = 149 bits (164), Expect = 7e-31 Identities = 369/552 (67%), Gaps = 20/552 (4%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||||||||| || | ||||| Sbjct 1879 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCC 1820 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || || | |||||| | ||||||||||| ||||||| ||| ||||||||| Sbjct 1819 TGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGAT 1760 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 || || ||| || || || || | | | | || | | || || | Sbjct 1759 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTTTC 1700 Query 74925 -ATCCAAGTCTGAG--CCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 ||||| |||||| ||||||||||||| ||||||| ||| || || ||||| || Sbjct 1699 AATCCA--TCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 1642 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | |||||||| |||||||| | || ||||| ||| |||| |||| || || ||| Sbjct 1641 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 1582 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 | ||||| ||||| ||| || ||| ||| | ||||||| | || ||||| | Sbjct 1581 ATTTCCGAGTGAATGTTCTCAATG-GCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 75101 AATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 |||||| || || | |||| || | | ||||| | || ||||| || || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCA--GCCAAGTTCTCAGTCACAATGCCATCAGAC 1465 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCC 75218 || || || || |||| ||| || |||||||| |||||| | ||||| || | Sbjct 1464 GCAGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTC 1405 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCG 75276 |||| || | || || | || | ||||||| | ||||| || | || | | Sbjct 1404 CAATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCA--G 1347 Query 75277 CCTTTTTGTACA 75288 |||||||||||| Sbjct 1346 CCTTTTTGTACA 1335 >seq24165 Length=2677 Score = 136 bits (150), Expect = 4e-27 Identities = 364/550 (66%), Gaps = 16/550 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||| ||||| || | ||||| Sbjct 2313 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 2254 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || || | |||||| | ||||||||||| ||||||| || ||||||||| Sbjct 2253 TGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGAT 2194 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 || || ||| || || || || | | | | ||| | | || || | Sbjct 2193 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTC 2134 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | | |||||||||||||| ||||| | ||| || || ||||| || | Sbjct 2133 AATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATT 2074 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 |||||||| |||||||| | || ||||| ||| |||| |||| || || ||| | Sbjct 2073 GAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACAT 2014 Query 75044 CTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||||| ||||| ||| || ||| ||| | ||||||| | || ||||| | | Sbjct 2013 TTCCGAGTGAATGTTCTCAATG-GCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGA 1955 Query 75103 TCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 |||| || || | |||| || | | ||||| | || ||||| || || || Sbjct 1954 TCTGAACCTCGGTCATGAAGCGACCA--GCCAAGTTCTCAGTCACAATGCCATCAGATGC 1897 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCA 75220 || || || |||| ||| ||| |||||||| |||||| | ||||| || ||| Sbjct 1896 AGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1837 Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCC 75278 || || | || || | || | ||||||| | ||||| || | || | ||| Sbjct 1836 ATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCA--GCC 1779 Query 75279 TTTTTGTACA 75288 |||||||||| Sbjct 1778 TTTTTGTACA 1769 >seq35896 Length=749 Score = 129 bits (142), Expect = 6e-25 Identities = 218/314 (69%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||||||||| || | ||||| Sbjct 357 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCC 298 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || || | |||||| | ||||||||||| ||||||| ||| ||||||||| Sbjct 297 TGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGAT 238 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 || || ||| || || || || | | | | || | | || || | Sbjct 237 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTTTC 178 Query 74925 -ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 ||||| ||||| |||||||||||||| ||||||| ||| || || ||||| || Sbjct 177 AATCCA--TCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 120 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | |||||||| |||||||| | || ||||| ||| |||| |||| || || ||| Sbjct 119 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 60 Query 75042 GTCTCCGAATGAAT 75055 | ||||| ||||| Sbjct 59 ATTTCCGAGTGAAT 46 >seq310 Length=11085 Score = 113 bits (124), Expect = 5e-20 Identities = 290/438 (66%), Gaps = 9/438 (2%) Strand=Plus/Minus Query 55496 CTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTC 55555 || || ||||| ||||| || || || || | ||||| |||| ||||| ||| || Sbjct 636 CTTGTCGCGCCTATGCCGACGGCTTCTACTTCCCAGATACTGGGAAACAATGAGTGCTTT 577 Query 55556 GAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC 55615 ||||| |||||| |||| |||||| | || | | | || || || ||| ||||| Sbjct 576 GAGCCCTACACGTCCAATATCTACACAAGGCGCATCTTGGCCGGAGACTTTACGGTGATC 517 Query 55616 AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGACG 55675 ||| | ||| | ||| |||||| | | | | |||||||| || |||| Sbjct 516 AACGAACACTTGCTCAGAGACCTGATGGACCTGGGCCTGTGGAACCATGCCATGAAGAAC 457 Query 55676 GATATTGTGCGGAACGGGGGGTCCGT-----CCAGAATCTGGAGATTCCTCTGCGT-CTC 55729 | | | || || || || ||| | | ||||| ||| ||| ||| Sbjct 456 AAGCTCATCGCCCACAATGGCTCTGTGCAAGCCATAGAC--GAGATCCCTA-GCGAGCTC 400 Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 ||| ||||| || || ||||||||||| ||| | ||| | |||||| ||| Sbjct 399 AAGCGCCTTTACAAAACTGTTTGGGAGATTCCTCAGCGTATTCTCTTGGACATGGCAGCT 340 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || | |||||||||||||| |||| || ||| | | |||| | || ||| Sbjct 339 GACCGAGCCGCGTACATCGACCAAAGCCAGAGCCTCAACGTATATATGGCCGAGCCCTCA 280 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 | |||| | | ||||||||||||||||| ||||||||||| || ||||| || ||| Sbjct 279 TTCGCCAGACTCACCTCGATGCACTTTTACGCATGGAAGAAGGGCCTAAAGACTGGAATG 220 Query 55910 TACTATCTGCGGACCCGC 55927 ||||| || || |||||| Sbjct 219 TACTACCTACGCACCCGC 202 >seq663 Length=3190 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| || || ||||||||||| ||| | ||| | |||||| ||||| || | Sbjct 2980 TTTACAAAACTGTTTGGGAGATTCCTCAGCGTATTCTCTTGGACATGGCAGCTGACCGAG 3039 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 |||||||||||||| |||| || ||| | | |||| | || ||| | |||| Sbjct 3040 CCGCGTACATCGACCAAAGCCAGAGCCTCAACGTATATATGGCCGAGCCCTCATTCGCCA 3099 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 | | ||||||||||||||||| ||||||||||| || ||||| || |||||||| | Sbjct 3100 GACTCACCTCGATGCACTTTTACGCATGGAAGAAGGGCCTAAAGACTGGAATGTACTACC 3159 Query 55917 TGCGGACCCGC 55927 | || |||||| Sbjct 3160 TACGCACCCGC 3170 >seq24166 Length=499 Score = 107 bits (118), Expect = 2e-18 Identities = 321/489 (66%), Gaps = 16/489 (3%) Strand=Plus/Minus Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || | |||||| | ||||||||||| ||||||| || ||||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC------ 74924 || || ||| || || || || | | | | ||| | | || || | Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCA 378 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984 ||||| | | |||||||||||||| ||||| | ||| || || ||||| || | | Sbjct 377 ATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTG 318 Query 74985 AAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTC 75044 ||||||| |||||||| | || ||||| ||| |||| |||| || || ||| | Sbjct 317 AAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATT 258 Query 75045 TCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||||| ||||| ||| || ||| ||| | ||||||| | || ||||| | || Sbjct 257 TCCGAGTGAATGTTCTCAATG-GCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGAT 199 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| || || | |||| || | | ||||| | || ||||| || || || Sbjct 198 CTGAACCTCGGTCATGAAGCGACCA--GCCAAGTTCTCAGTCACAATGCCATCAGATGCA 141 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || |||| ||| ||| |||||||| |||||| | ||||| || |||| Sbjct 140 GCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 81 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCT 75279 | || | || || | || | ||||||| | ||||| || | || | |||| Sbjct 80 TGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCA--GCCT 23 Query 75280 TTTTGTACA 75288 ||||||||| Sbjct 22 TTTTGTACA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546822045521200