Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq20128 89.7 4e-13 seq2942 84.2 2e-11 >seq20128 Length=1734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | ||||| || ||| || | || || || ||| | Sbjct 1089 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCT 1148 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || || ||||| || ||||| || || |||| || | Sbjct 1149 GACTCTATTGAGAAT--GTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATC 1206 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||| || ||||| |||| |||| |||| |||| | || |||| Sbjct 1207 AGCAACGCTTGATCTTTGCAGGCAAACAGCTGGAGGACGGCCGCACCTTGGCTGACTACA 1266 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| |||| | || ||||| | || ||| | || ||| Sbjct 1267 ACATCCAAAAGGAGTCCACTCTTCACTTGGTGCTTCGCTTGAGGGGAGGC 1316 >seq2942 Length=1743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || || ||||| || ||| || | || || || ||| | Sbjct 1636 ATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAAGTGGAGAGCTCT 1577 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || || || || || ||||| |||||| |||| || | Sbjct 1576 GACTCGATTGAAAAT--GTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACC 1519 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| || || | || || | |||| | | | || |||| Sbjct 1518 AGCAACGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCAGACTACA 1459 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| |||| | | ||||| || || Sbjct 1458 ACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCAGATTGCGAGGAGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355612610617638