Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5862 259 7e-64 seq24165 248 1e-60 seq663 219 6e-52 seq24166 214 3e-50 seq310 203 5e-47 seq35896 165 1e-35 >seq5862 Length=2677 Score = 259 bits (286), Expect = 7e-64 Identities = 420/602 (70%), Gaps = 12/602 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || ||||||||||| |||||||| || || ||||| || || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || |||||||| || | ||| || |||||||| || | ||| || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 1762 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC----TCCGTAACT--GGCATCATTA 46803 || || || ||||| |||||||| || | |||||| ||| || | || | || Sbjct 1761 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 1702 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | |||||| || | ||||| ||||| || ||||| || |||||| ||||| || ||| Sbjct 1701 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 1642 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || ||||| | || || || || || || || || ||||| || || |||| Sbjct 1641 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 1582 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 ||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| | Sbjct 1581 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGA 1522 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 ||||| ||||| || || || ||| ||| |||||| |||| || |||||| ||| Sbjct 1521 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCA 1462 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAG 47103 ||||| || ||||||||| || ||||| | ||| ||||| | || || ||||| Sbjct 1461 GCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 1402 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | |||| ||| | | ||||| || || |||||||| || || ||||| || ||| Sbjct 1401 TGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 1342 Query 47164 TTATACATATTCCATATATCACGATATT---GGATCGGAAAAATAACAAATCTATTTGGA 47220 || ||||| | ||| | | || | | |||| ||||| | ||||| | |||||| Sbjct 1341 TTGTACATCTCCCA---AACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGA 1285 Query 47221 TT 47222 || Sbjct 1284 TT 1283 >seq24165 Length=2677 Score = 248 bits (274), Expect = 1e-60 Identities = 420/604 (70%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || ||||||||||| |||||||| || || || || || || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || | ||| ||||||||||| || | ||| || || ||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAG 2196 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC----TCCGTAACT--GGCATCATTA 46803 || || || ||||| |||||||| || | |||||| ||| || | || | || Sbjct 2195 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT 2136 Query 46804 TGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | |||||| ||||| ||||| ||||| || ||||| ||| |||||| ||||| || | Sbjct 2135 TCAATCCA--TTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGG 2078 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 |||| ||||| | || || | || || || || || ||||| || || || Sbjct 2077 CATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAAT 2018 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 2017 ACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1958 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 ||||| ||||| || || || ||| ||| |||||| |||| || |||||| | Sbjct 1957 GGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATG 1898 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101 ||||||| || ||||||||| ||| ||||| | ||| ||||| | || || |||| Sbjct 1897 CAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCC 1838 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 | | ||| ||| | | ||||| || || |||||||| || || ||||| || | Sbjct 1837 AATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCT 1778 Query 47162 TTTTATACATATTCCATATATCACGATATT---GGATCGGAAAAATAACAAATCTATTTG 47218 |||| ||||| | ||| | | || | | |||| ||||| | ||||| | |||| Sbjct 1777 TTTTGTACATCTCCCA---AACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTG 1721 Query 47219 GATT 47222 |||| Sbjct 1720 GATT 1717 >seq663 Length=3190 Score = 219 bits (242), Expect = 6e-52 Identities = 483/720 (67%), Gaps = 8/720 (1%) Strand=Plus/Minus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||| |||| || | | ||||||||| ||||||| || | | ||| || Sbjct 2065 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTGGTGCC 2006 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| || || | || |||||| || || | ||| || | | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 |||| ||| |||||| || ||||||| || || | ||||| || || |||||| Sbjct 1945 GGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTT 1886 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || || || |||||||| | || || | ||||| || || ||||| || || | | Sbjct 1885 TTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCT 1826 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 ||| || || ||| || ||||||| || | || |||| || || |||| |||| Sbjct 1825 CCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAAC 1766 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATT--TGTTCCAGAAATATAACTTCCACATGCAC 76856 |||||||| | ||||| ||||| || || || || || || | || | |||| Sbjct 1765 ATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTT--AGCAGCAC 1708 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 |||| || | | || ||||||||||| || | || || || | |||||| ||| Sbjct 1707 GAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGTT 1648 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 | | ||||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 1647 TAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAAG 1588 Query 76977 ACA--TTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 | | | || | || || || ||||| || | ||| |||| |||||||||||| Sbjct 1587 AAAGCTGTGGTCTTG--GCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAG 1530 Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCC 77094 || || || | ||||| ||||| || | || ||| || || || ||| | ||| Sbjct 1529 TTGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAGTTTTATGCAGTCC 1470 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154 ||||| || ||||||||||| || || |||| ||| ||| |||| || | ||| || Sbjct 1469 CACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAATTTGAA 1410 Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 | || || ||||| || || || |||||||| || | ||||| ||||| || Sbjct 1409 GAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATTAAAGAGGAAGTCCCTTTCATA 1350 >seq24166 Length=499 Score = 214 bits (236), Expect = 3e-50 Identities = 345/493 (70%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| || || | ||| ||||||||||| || | ||| || || ||||| || Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTC----TCCGTAACT--GGCATCATTATGA 46806 || || ||||| |||||||| || | |||||| ||| || | || | || | | Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCA 378 Query 46807 ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| ||||| ||||| ||||| || ||||| ||| |||||| ||||| || |||| Sbjct 377 ATCCA--TTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCAT 320 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 | ||||| | || || | || || || || || ||||| || || ||||| Sbjct 319 TGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACA 260 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 |||| || |||||||| ||||| || |||||||| ||||| || || | || |||| | Sbjct 259 TTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGA 200 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 |||| ||||| || || || ||| ||| |||||| |||| || |||||| |||| Sbjct 199 TCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAG 140 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 |||| || ||||||||| ||| ||||| | ||| ||||| | || || ||||| | Sbjct 139 CAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAAT 80 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 ||| ||| | | ||||| || || |||||||| || || ||||| || |||| Sbjct 79 GGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTT 20 Query 47165 TATACATATTCCA 47177 | ||||| | ||| Sbjct 19 TGTACATCTCCCA 7 >seq310 Length=11085 Score = 203 bits (224), Expect = 5e-47 Identities = 477/718 (66%), Gaps = 4/718 (1%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||| |||| || | | ||||||||| ||||||| || | | ||| || Sbjct 1307 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTGGTGCC 1366 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| || || | || |||||| || || | ||| || | | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 |||| ||| |||||| || ||||||| || || | ||||| || || |||||| Sbjct 1427 GGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTT 1486 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || || || | ||||| | || || | ||||| || || ||||| || || | | Sbjct 1487 TTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCT 1546 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 ||| || || ||| || ||||||| || | || |||| || || |||| |||| Sbjct 1547 CCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAAC 1606 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATT--TGTTCCAGAAATATAACTTCCACATGCAC 76856 |||||||| | ||||| || || || || || || || || | || | |||| Sbjct 1607 ATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTT--AGCAGCAC 1664 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 |||| || | | || ||||||||||| || | || || || | |||||| ||| Sbjct 1665 GAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGTT 1724 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 | | ||||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 1725 TAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAAG 1784 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 | | || | || || ||||| || | ||| |||| |||||||||||| || Sbjct 1785 AAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGTT 1844 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 || || | ||||| ||||| || | || ||| || || || ||| | ||||| Sbjct 1845 GTTGGGAGATCAGATTATATGTCTCCAACACCGCTCTGATGTCAGTTTTATGCAGTCCTA 1904 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 |||| || ||||||||||| || || || | ||| ||| |||| || | ||| || | Sbjct 1905 CAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTTGAAGA 1964 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 || || ||||| || || || |||||||| || | ||||||||||| || Sbjct 1965 GATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTCATA 2022 >seq35896 Length=749 Score = 165 bits (182), Expect = 1e-35 Identities = 252/358 (70%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || ||||||||||| |||||||| || || ||||| || || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || |||||||| || | ||| || |||||||| || | ||| || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 240 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC----TCCGTAACT--GGCATCATTA 46803 || || || ||||| |||||||| || | |||||| ||| || | || | || Sbjct 239 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 180 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | |||||| || | ||||| ||||| || ||||| || |||||| ||||| || ||| Sbjct 179 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 120 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || ||||| | || || || || || || || || ||||| || || |||| Sbjct 119 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 60 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 59 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712421140702080