Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5862 104 2e-17 seq24165 95.1 1e-14 seq24166 91.5 2e-13 >seq5862 Length=2677 Score = 104 bits (114), Expect = 2e-17 Identities = 302/462 (65%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| || ||||| ||||| ||||| || || ||||||||||| || | Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 |||||||||| || | || |||| |||||| || | | || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 1763 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT---TGCATTATAATC 23684 |||||||| ||||| || || ||||| | | | |||||| ||| | | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 ||||||| | | ||| | ||| ||| || || | | ||||| || || Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 || ||||| | || ||| || || | | || || || || | | ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| || ||||| || ||||| || |||||||| || || || || | ||| |||| Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | ||||| || | | || | ||| || || || | ||||| |||||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 ||||||||| || | ||| | |||||||| ||| | ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATC 1421 >seq24165 Length=2677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 300/462 (65%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| || ||||| ||||| ||||| || || ||||| ||||| || | Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG-GAAAAGAA 23627 |||||||| | || | || || | |||||| || | | || | | ||| || ||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAA 2197 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT---TGCATTATAATC 23684 |||||||| ||||| || || ||||| | | | ||||| ||| | | Sbjct 2196 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTT 2137 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 ||||||||| | ||| | ||| ||| || ||| | | ||||| || || Sbjct 2136 TTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGC 2077 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 || ||||| | || ||| | || | | || || || || | | ||| Sbjct 2076 ATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 2017 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| || ||||| || ||||| || |||||||| || || || || | ||| |||| Sbjct 2016 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1957 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | ||||| || | | || | ||| || || || | ||||| |||||| || Sbjct 1956 GATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGC 1897 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 ||||||||| || | ||| |||||||||| ||| | ||||| Sbjct 1896 AGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATC 1855 >seq24166 Length=499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||||||| || ||||| || ||||| || |||||||| || || || || | ||| || Sbjct 264 ATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 205 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 || | ||||| || | | || | ||| || || || | ||||| |||||| Sbjct 204 AGGGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGA 145 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 ||||||||||| || | ||| |||||||||| ||| | ||||| Sbjct 144 TGCAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATC 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521112567751600