Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq71924 120 6e-22 seq72037 98.7 2e-15 seq70745 98.7 2e-15 seq72344 96.9 7e-15 seq72260 96.9 7e-15 seq71316 96.9 7e-15 seq71128 96.9 7e-15 seq70118 96.9 7e-15 seq70105 96.9 7e-15 seq70104 96.9 7e-15 seq69613 96.9 7e-15 seq69612 96.9 7e-15 seq68896 96.9 7e-15 seq68735 96.9 7e-15 seq68474 96.9 7e-15 seq68473 96.9 7e-15 seq68110 96.9 7e-15 seq67083 96.9 7e-15 seq33725 93.3 9e-14 >seq71924 Length=31871 Score = 120 bits (132), Expect = 6e-22 Identities = 270/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 230203 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 230262 || || || ||| | || || || || |||||| |||||||||||||| ||| ||| Sbjct 8792 GTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCTCCATCTTTTGGCTGAAGAAGCGAGGC 8733 Query 230263 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAA 230322 | ||||| || ||| | || |||||| ||||||| || ||||||||||| || Sbjct 8732 CTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGTCTTCACTGC 8673 Query 230323 CAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAA 230382 | || | || | ||| | |||| ||||| | | |||| | || | Sbjct 8672 GACTTTGCTTGTCTCCTCTATAGCATGCTCGTCAACAAACCCTCGCCCGAG--GTTCCTA 8615 Query 230383 CAA--ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCAT 230440 | |||||| || || || || | || ||||||||| | || || | || Sbjct 8614 AGACGATCATTCTCGAGGCTGTCGAGATAGAGAAGGAGTTCGTCACCGAGTCTCTCCCC- 8556 Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 || || || || ||||||||||| || || ||| | ||||||||||||||||| |||||| Sbjct 8555 GTGGCTCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATCGAATTCGTCGCCGAC 8496 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559 || | | || || ||||| | ||||| | | || | |||||||| | | Sbjct 8495 CGTCTCCTCGTGGCTCTTGGCTGTGAGAAGCATTTCCACAAGACCAACCCCTTCCCCTGG 8436 Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 |||||||| || ||||| | || ||||||||||||||||| Sbjct 8435 ATGGAGCTTATCTCGCTCGAGGGCAAGACCAACTTCTTCGA 8395 >seq72037 Length=46906 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 165698 CTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTC 165757 |||| ||| | ||| ||||||||||||||||||||| ||||| ||||||| |||||| Sbjct 17282 CTTAGAACACACGCCGACCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTC 17223 Query 165758 GTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||| | ||| Sbjct 17222 GTGGGTTCGAGCCCCACGGTTGGC 17199 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 14757 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 14816 Query 165776 ATGGGC 165781 | ||| Sbjct 14817 GTTGGC 14822 >seq70745 Length=2775 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||| | |||| ||||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 421 AACACGTGCCGACCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGG 480 Query 165763 TTCGAGCCCCACGATGGGC 165781 ||||||||||||| | ||| Sbjct 481 TTCGAGCCCCACGGTTGGC 499 >seq72344 Length=28007 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 12586 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 12645 Query 165776 ATGGGC 165781 | ||| Sbjct 12646 GTTGGC 12651 >seq72260 Length=90579 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 51812 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 51871 Query 165776 ATGGGC 165781 | ||| Sbjct 51872 GTTGGC 51877 >seq71316 Length=3311 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 780 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 721 Query 165776 ATGGGC 165781 | ||| Sbjct 720 GTTGGC 715 >seq71128 Length=117857 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 47423 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 47364 Query 165776 ATGGGC 165781 | ||| Sbjct 47363 GTTGGC 47358 >seq70118 Length=6833 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 2610 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 2551 Query 165776 ATGGGC 165781 | ||| Sbjct 2550 GTTGGC 2545 >seq70105 Length=9224 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 6727 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 6668 Query 165776 ATGGGC 165781 | ||| Sbjct 6667 GTTGGC 6662 >seq70104 Length=9240 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 6727 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 6668 Query 165776 ATGGGC 165781 | ||| Sbjct 6667 GTTGGC 6662 >seq69613 Length=8012 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 5006 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 4947 Query 165776 ATGGGC 165781 | ||| Sbjct 4946 GTTGGC 4941 >seq69612 Length=8000 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 4995 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 4936 Query 165776 ATGGGC 165781 | ||| Sbjct 4935 GTTGGC 4930 >seq68896 Length=9866 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 2125 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 2184 Query 165776 ATGGGC 165781 | ||| Sbjct 2185 GTTGGC 2190 >seq68735 Length=1806 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 1600 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 1659 Query 165776 ATGGGC 165781 | ||| Sbjct 1660 GTTGGC 1665 >seq68474 Length=2043 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 691 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 750 Query 165776 ATGGGC 165781 | ||| Sbjct 751 GTTGGC 756 >seq68473 Length=952 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 752 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 811 Query 165776 ATGGGC 165781 | ||| Sbjct 812 GTTGGC 817 >seq68110 Length=1215 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 436 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 495 Query 165776 ATGGGC 165781 | ||| Sbjct 496 GTTGGC 501 >seq67083 Length=11423 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 8249 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACG 8308 Query 165776 ATGGGC 165781 | ||| Sbjct 8309 GTTGGC 8314 >seq33725 Length=127 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||| Sbjct 12 CTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGACCCCCACG 71 Query 165776 ATGGGC 165781 | ||| Sbjct 72 GTTGGC 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056842586924930