Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq71924 150 2e-31 >seq71924 Length=31871 Score = 150 bits (166), Expect = 2e-31 Identities = 467/717 (65%), Gaps = 17/717 (2%) Strand=Plus/Plus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || || ||||| || || |||||||| | ||| |||||| || || ||| || Sbjct 8497 TCGGCGACGAATTCGATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGAGCCACG 8556 Query 16859 GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATACT--- 16914 || |||| || || | || || || |||||| | || || || ||| || | Sbjct 8557 GGGAGAGACTCGGTGACGAACTCCTT-CTCTATCTCGACAGCCTCGAGAATGATCGTCTT 8615 Query 16915 AGCAACTCGTTCCTCGGACG-GTGTATGTTTAAGATGTT--TAAACATCAGACATGCGAA 16971 || ||| ||||| || | || |||| | || | || | | ||||| || || Sbjct 8616 AGGAAC------CTCGGGCGAGGGTTTGTTGACGAGCATGCTATAGAGGAGACAAGCAAA 8669 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||||| || | |||||||| | |||||| || ||||| ||||| | | |||||||| Sbjct 8670 GTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGTCCGGGCAT 8729 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||||| ||||| | |||||| || | | ||| || || ||||| || ||||| Sbjct 8730 GAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAAATGCCCTC 8789 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT---CTTTGTTACGAATCCA 17148 |||| ||||| | || | || || ||| | ||| | | | | || | ||||| Sbjct 8790 TACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTCCTTGCCGATCCA 8849 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 || |||||||||| || | || | || || ||||| ||||| || | Sbjct 8850 CTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATGGCGCGGAAGAG 8909 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 || || || |||| | | || || ||||| || ||| ||||| || || Sbjct 8910 GCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAATACATCTCCGA 8969 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 ||| ||||| || ||||| || || ||||| || ||||| || || || | | ||| || Sbjct 8970 GTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCGGGAACTTGCAC 9029 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 |||| ||| || | || ||||| || || || ||||| || || ||||| || Sbjct 9030 TTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTAGCCGCGAAGAA 9089 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAA 17448 |||| | ||||||||||| | || |||||| || || | ||||| || || Sbjct 9090 GGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCCCAGTGATTCAA 9149 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 || || || ||| |||||||||| ||||| || |||| | ||||| || || Sbjct 9150 GTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTA 9206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517077150069480