Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq71924 138 1e-27 >seq71924 Length=31871 Score = 138 bits (152), Expect = 1e-27 Identities = 362/549 (66%), Gaps = 5/549 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||||| || || || ||||| | |||||| || ||||||||||| | Sbjct 8659 AGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAG 8718 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC-CCCGAAAA 16317 | || ||||| ||||| ||||| | ||| || || | |||| | | ||||| || Sbjct 8719 AGTCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGG-AGCAGAAGCTGCCCGAGAA 8777 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT---CTTT 16374 ||| || ||||| || | |||||| | || | || || ||| | || | | | | Sbjct 8778 GAAAATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTC 8837 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | ||||| || |||| ||||| || | ||| | || || ||||| || Sbjct 8838 CTTGCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGAT 8897 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||| || | || || || | || | | || || || || || | Sbjct 8898 GGCGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGA 8957 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||| || ||||| ||||| || ||||| || || |||||||||||||| || ||||| Sbjct 8958 ATACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTC 9017 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| |||||| || || | || || |||||| || ||||||||||| Sbjct 9018 GGGAACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACT 9077 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 || || || || |||| | |||||||||||| | || ||||| || || Sbjct 9078 AGCCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGC 9137 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | || || || || || ||| |||||||| | ||||| ||| |||| | || Sbjct 9138 CCAGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGC 9197 Query 16735 CTTTTTATA 16743 ||| || || Sbjct 9198 CTTCTTGTA 9206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510951499648520