Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq71924 219 5e-52 >seq71924 Length=31871 Score = 219 bits (242), Expect = 5e-52 Identities = 386/560 (69%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || |||||||| ||||||||||| | || || | ||||| ||||| | ||| Sbjct 8661 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAG 8720 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||||||||| ||||| ||||| || |||||||| ||||| ||| || || ||||| Sbjct 8721 TCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAA 8780 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-----CCGGCGCTGTCA 33755 || || ||||| |||||||| |||| || | ||| | | | ||| || | Sbjct 8781 AATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTC-CT 8839 Query 33756 TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || |||||||| |||||| |||||||||||||| || |||||| ||||| |||| Sbjct 8840 TGCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATGG 8899 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | || || || || || || || || ||||| | ||| || Sbjct 8900 CGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAAT 8959 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| ||||| ||||||||||||||||| || || ||||| ||||| || | ||||||| Sbjct 8960 ACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCGG 9019 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 || |||||||| | || || | || | ||| ||| || || || ||||| | Sbjct 9020 GAACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTAG 9079 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || |||| || || || || || | || ||||| || || || Sbjct 9080 CCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCCC 9139 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | ||| | || | || ||| |||||||| | ||||| || || ||||| |||| Sbjct 9140 AGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCCT 9199 Query 34114 TTTTATACATATTCCAGATG 34133 | || || | | ||||||| Sbjct 9200 TCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629247528472080