Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq71924 95.1 1e-14 >seq71924 Length=31871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 310/475 (65%), Gaps = 20/475 (4%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || || || | ||| ||||| | || || || || || ||||| | | Sbjct 8661 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAG 8720 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAG 11746 ||||||||| | ||||| || || | |||||| || ||||| | || || || ||| Sbjct 8721 TCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTG--CCCGAGAAG 8778 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTA----CTCTT------TCTCCATATACCTT 11796 || || ||||| || || ||||| | | | ||| ||||| | ||| Sbjct 8779 AAAATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCC-TGGCCCTC 8837 Query 11797 GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTC 11856 |||| ||||| || | ||||| || || |||||||| || | || ||||| Sbjct 8838 CTTGCCG---ATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTC 8894 Query 11857 TATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916 || ||| || | | || || ||| || | || || || || || | | Sbjct 8895 GATGGCGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAG 8954 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 |||||| || || ||||| ||||| || || ||||| ||||||||||| || || || Sbjct 8955 GGAATACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGC 9014 Query 11977 CTCTGAACACTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCAT 12035 ||| | | || || ||| ||| || | | || | ||||||| |||||||| | Sbjct 9015 CTCGGGAACTTGCACTTCCTTCAT-GAAGCGAACAGCGAGATTCTCAGCAACAATACCGT 9073 Query 12036 CACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 |||||| || || || || || | || || || |||| || ||||| ||||| Sbjct 9074 CACTAGCCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGT 9128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468100720633840