Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq71924 217 2e-51 >seq71924 Length=31871 Score = 217 bits (240), Expect = 2e-51 Identities = 390/563 (69%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| ||||||||||| | || || | ||||||||||| | ||| Sbjct 8661 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAG 8720 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGA 36275 ||||||||| ||||| ||||| || |||||||| ||||| ||| | | | || || |||| Sbjct 8721 TCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGA-GCAGAAGCTGCCCGAGAAGA 8779 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-----CCGGCACTGTC 36330 |||| || ||||| || ||||| |||| || | ||| | | | ||| || | Sbjct 8780 AAATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTC-C 8838 Query 36331 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || |||||||| |||||| |||||||||||||| || |||||| || || || Sbjct 8839 TTGCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATG 8898 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || ||||| | || || || || || || || || || || | ||| | Sbjct 8899 GCGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAA 8958 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || | |||||| Sbjct 8959 TACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCG 9018 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || || ||||| | || || | || | ||| ||| || || |||||||| Sbjct 9019 GGAACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTA 9078 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTTTAT 36626 || || || || |||| || || || || || | || |||| || ||| || Sbjct 9079 GCCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTG--AGCGAGG 9136 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| | ||| | || | || ||| |||||||| | ||||| || || ||||| | Sbjct 9137 CCCAGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAG 9196 Query 36687 CCTTTTTATACATATTCCAGATG 36709 |||| || || | | ||||||| Sbjct 9197 CCTTCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657577063117240