Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq71924 96.9 2e-15 >seq71924 Length=31871 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGC--CA 22798 |||||| | | ||||| || || || ||| | | | |||| || || | | || || Sbjct 8813 CGTCTCATTGGTTTTGCTGCCGTAGAGGGCAT--TTTCTTCTCGGGCAGCTTCTGCTCCA 8756 Query 22799 TATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTA 22858 | || ||||||||||| || |||||||| || | | |||||||||||| | || | Sbjct 8755 TCTTTTGGCTGAAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCA 8696 Query 22859 GCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAG 22904 |||||||||| ||||| ||||| |||||||||||| | || | ||| Sbjct 8695 GCCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCTCCTCTATAG 8650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355919220619633