Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq71761 123 2e-23 seq68586 118 1e-21 seq71072 114 1e-20 seq68691 109 5e-19 seq71032 102 8e-17 seq71838 100 3e-16 seq72197 96.9 3e-15 seq71822 87.8 2e-12 >seq71761 Length=19511 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | ||||| || ||||||||||| || ||| || |||| | Sbjct 7964 CGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCCAGAGTGCGACCG 8023 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || | || ||||| ||||| ||||| || |||||||| ||| Sbjct 8024 TCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTG 8083 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || || | | || | |||||| ||| ||| ||||| | || | Sbjct 8084 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATG 8143 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||||||||| ||||| || |||||| Sbjct 8144 GTCTTGCCAGTCAACGTTTTGACGAAGATCTGCATA 8179 >seq68586 Length=2644 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| ||||| || || | |||| ||| |||||||| || ||| Sbjct 651 GTAGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 592 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||| ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 591 GCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 532 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||||||||| | || | |||||||| ||||||||| Sbjct 531 ACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGTCAACGTT 472 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 471 TTGACGAAGATCTGCATA 454 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || || | |||| ||| ||||| || || || Sbjct 423 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 364 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 363 GCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 304 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||||||||||| ||| | |||||||| || | || Sbjct 303 ACGTTCTCAATGGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTC 244 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 243 TTGACGAAGATCTGCATA 226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || | |||| ||| |||||||| Sbjct 202 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTG 143 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| || || ||||| ||||| || ||||| || ||||| ||| || Sbjct 142 CTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATCTT 83 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | |||||| ||| ||||||||||| ||| | |||||||| || Sbjct 82 CTGCTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 23 Query 139741 CAACGTTTTTACGAATATTTGC 139762 | || || ||||| || ||| Sbjct 22 AAGGGTCTTGACGAAGATCTGC 1 >seq71072 Length=54149 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||| ||||| || || ||||| || ||| Sbjct 14049 GCCACCGCGCAGACGAAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 14108 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || || |||| || || ||||| ||||| || Sbjct 14109 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 14168 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||||| |||| | || | |||||| ||| |||||| Sbjct 14169 GATGCCCTCCTTGTCCTGGATCTTTTGCTTTACGTTCTCAATGGTGTCGCTGGACTCCAC 14228 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | || || ||||| || ||||| Sbjct 14229 CTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACGAAGATCTGCAT 14276 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || ||| | |||| ||| |||||||| || || Sbjct 13852 GTCGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 13911 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 13912 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 13971 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||||||||| | ||| | ||||||||||| | || Sbjct 13972 ACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTC 14031 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 14032 TTGACGAAGATCTGCAT 14048 >seq68691 Length=2609 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| ||||| || || | |||| ||| ||||| || || || Sbjct 615 GTAGACTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCG 556 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| ||||| || ||||| || ||||| ||| ||||| || Sbjct 555 GCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 496 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||||||||| | ||| | ||||||||||| | || Sbjct 495 ACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTC 436 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 435 TTGACGAAGATCTGCATA 418 >seq71032 Length=21228 Score = 102 bits (112), Expect = 8e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 ||||||| || || || ||||| || || | || || | ||||||||||| |||| Sbjct 16140 CGACGGTGAACTGGATGGCGTTGGCAGCGGGTCGGGTTCGCAGGTAGTACATGCCAGTCT 16081 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGG 152838 | || || | |||| |||| | ||||| |||| | ||| || |||| ||| ||| Sbjct 16080 TCAGACCCTTATTCCAGGCGTAGAAGTGCATGGACGTAAGCTTGGCGAAAGAAGGCTCGC 16021 Query 152839 CCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGT 152898 ||||||| | ||| | ||||||||||| |||||| | ||| | ||| || ||||||| Sbjct 16020 CCATGTAAATGTTGAGAGATTGACTTTGGTCAATATAAGCGGAGCGATCGGCAGCCATGT 15961 Query 152899 CGAT 152902 |||| Sbjct 15960 CGAT 15957 >seq71838 Length=148749 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||||||||| |||||||| ||||| ||||| || ||| Sbjct 72888 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTG 72947 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || || || || || | | ||| | ||||||| | ||||||||||| ||| | Sbjct 72948 TCCTGAATCTTCTGCTTAACATTTTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 73007 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 73008 GTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 73042 >seq72197 Length=52184 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| |||||||| || || Sbjct 20847 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 20788 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || || || ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 20787 GCGAAAATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTYTGCTTC 20728 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||||||||| | ||| | ||||||||||||| || Sbjct 20727 ACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 20668 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 20667 TTAACAAATATCTGCAT 20651 >seq71822 Length=82145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || ||| ||| |||||||| || || Sbjct 74630 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGCTGCGGCCGTCCTCGAGCTGCTTGCCG 74571 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG-TCGGTGATTTTTTGTTT 139686 || |||| || || ||||| |||||||| ||||| || ||| || | || | || || Sbjct 74570 GCGAAGATAAGGCGCTGCTGCTCGGGAGGAATGCCCTCCTTGGTCTG-GACCTGCTGCTT 74512 Query 139687 TA-GCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||||| || |||||| ||| | | ||||| | || | ||||||||||| | | Sbjct 74511 CACGCTGTTG-ACCGTGTCGCTGGCCCCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGG 74453 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| |||||||| |||| Sbjct 74452 TTTTGACGAATATCCGCAT 74434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495614993871200