Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq71924 232 1e-55 >seq71924 Length=31871 Score = 232 bits (256), Expect = 1e-55 Identities = 391/561 (70%), Gaps = 10/561 (2%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || |||||||| ||||||||||| | || || || ||||||||||| | ||| Sbjct 8661 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAG 8720 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGA 50077 ||||||||| ||||| ||||| || |||||||| ||||| ||| | | || || |||| Sbjct 8721 TCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGA-GCAGAAGCTGCCCGAGAAGA 8779 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA-----CTGGCGCTGTC 50132 | || || ||||| || ||||| ||| || | ||| | | ||||| || | Sbjct 8780 AAATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTC-C 8838 Query 50133 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || |||||||| |||||| |||||||||||||| || |||||| ||||| ||| Sbjct 8839 TTGCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATG 8898 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||| | || || || || || || || || ||||| | ||| | Sbjct 8899 GCGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAA 8958 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| ||||||||||||||||| || || ||||| ||||| || | |||||| Sbjct 8959 TACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCG 9018 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || |||||||| | || || |||| | ||| ||| || || |||||||| Sbjct 9019 GGAACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTA 9078 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || |||| || || || || || || || |||| || || | Sbjct 9079 GCCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCC 9138 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | ||| | || | || ||| |||||||| | ||||| || || ||||| ||| Sbjct 9139 CAGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCC 9198 Query 50491 TTTTTATACATATTCCAGATG 50511 || || || | | ||||||| Sbjct 9199 TTCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717618667974040