Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq71924 125 1e-23 seq71032 95.1 2e-14 >seq71924 Length=31871 Score = 125 bits (138), Expect = 1e-23 Identities = 373/562 (66%), Gaps = 14/562 (2%) Strand=Plus/Minus Query 125018 CATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT 125077 ||| ||||| | ||||| |||||| |||| ||||| ||||| | |||||| |||||||| Sbjct 9219 CATCTGGGAGTTCTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAAGAAGTCGATCT 9160 Query 125078 GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 || ||| || | | |||| |||| | ||| | ||| | || || Sbjct 9159 AGGCAGCGACTTGAATCACTGGGC--CTCGCTC-ACTAAGGACGAGAAGCACTTCATTAA 9103 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCC-GATGGAATCGTCAACGACAATCT-GTTGACA 125195 |||| | |||||||||| || |||| || || || || || ||||| | || Sbjct 9102 GCACGTGCTGGCCTTCTTCGC-GGCTAGTGACGGTATTGTTGCTGAGAATCTCGCTGTT- 9045 Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || ||| | || || |||| |||| | ||||| || |||||||||||| Sbjct 9044 CGCTTCATGAAGGAAGTGCAAGTTCCCGAGGCGCGTTGCTTCTATGGATTCCAAATCGCC 8985 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 ||||| ||| | |||||||| ||||| || || || |||| ||| | || || Sbjct 8984 ATTGAAAACATTCACTCGGAGATGTATTCCCTTCTTATCGACACCTACGTCAAGGACCCT 8925 Query 125316 CAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | || || || |||| ||| ||||| || ||||| || | || ||||| Sbjct 8924 -ATCGAGAAGGATCGCCTCTTCCGCGCCATCGAAACTGTGCCTTCAGTCAAAAAGAAGGC 8866 Query 125375 TCAATGGGTGATTCGGTGGATCG---ATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 | |||| || |||||||| | || | | || | | ||| || | || | Sbjct 8865 CGAGTGGGCTATCAAGTGGATCGGCAAGGAGGGCCAGGAGACCTTCGCTGAGCGTCTCAT 8806 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGC 125490 | || || |||||||||||||| ||||| ||||| || || ||| |||||||||||| Sbjct 8805 TGGTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCT-CCATCTTTTGGC 8747 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | |||||||| || |||||||||||||| | |||||| | || || |||| Sbjct 8746 TGAAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGACG 8687 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 |||| || ||||| |||||||| Sbjct 8686 AGGGTCTTCACTGCGACTTTGC 8665 >seq71032 Length=21228 Score = 95.1 bits (104), Expect = 2e-14 Identities = 201/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGC 97070 ||||| || || | |||||| |||| || ||||| || ||||| || | ||| Sbjct 14880 TGGGTTCCCGACCTTTTCATGGAGCGTGTGCGTGACGGCGGTGACTGGTCGCTCTTCTGC 14939 Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACG 97130 ||| || | | || ||||||| |||| ||||| || |||||| || |||| | Sbjct 14940 CCCAACGAGGCCCCGGGTCTGTTCGATACTTGGGGAGACGAGTTTAAGCAGCTGTACGAG 14999 Query 97131 GCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCG---ATGCACGAGAACTGTGGAAG 97187 ||||||||| ||||| || || | || |||| | || | ||||| ||| Sbjct 15000 CGCTACGAGCAGGAGGGTCG---CGCCCGCCGTGTCGTGAAGGCTCAGGAACTCTGGTTC 15056 Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247 | ||| | | ||||| | ||||| || ||||| ||||| ||||||||||| || Sbjct 15057 TCTATCCTCGAGTCTCAGATTGAGACGGGCACTCCCTACATGCTCTACAAGGACTCCTGC 15116 Query 97248 AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGA 97306 || ||||| ||||| | ||| | ||||||||| || ||||| ||||||| || Sbjct 15117 AACCGCAAGTCTAACCAGCAGCACCTCGGCACCATCCAGTCGTCCAACTTGTGCACAGA 15175 Score = 89.7 bits (98), Expect = 8e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||||||||| | | | | | ||||| ||||||||||| | Sbjct 15921 TACAAGACAGTGTGGGAGATTCCTCAGCGTGTAG-TAATCGACATGGCTGCCGATCGCTC 15979 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | || |||||||| |||||||| |||| | ||| | | |||||| | | | Sbjct 15980 CGCTTATATTGACCAAAGTCAATCTCTCAACATTTACATGGGCGAGCCTTCTTTCGCCAA 16039 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || || || ||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 16040 GCTTACGTCCATGCACTTCTACGCCTGGAATAAGGGTCTGAAGACTGGCATGTACTACCT 16099 Query 98219 GAGAAC 98224 | |||| Sbjct 16100 GCGAAC 16105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740388439528360