Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq71540 113 4e-20 seq68586 100 2e-16 seq71761 98.7 8e-16 seq72113 86.0 5e-12 seq71072 82.4 6e-11 >seq71540 Length=49709 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||||||||||||||| || |||| || | ||||||| Sbjct 42942 CACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGGGTGCGGCCGTCCTC 42883 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| ||||||||| |||||| || || | |||||| ||||| Sbjct 42882 AAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 42823 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || ||||| | | | || || || |||| |||| ||||||||| || Sbjct 42822 TATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACCTCGAGGGTAATGGTCTT 42763 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 42762 CCCCGTCAGCGTCTTAACAAAGATTTGCAT 42733 >seq68586 Length=2644 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 ||||| || |||| | | || | ||| | |||||||||||||| || ||||| || Sbjct 684 TTTCCACCGCGCAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCA 625 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 || | || ||||||| ||||| || || || ||||||| | |||||| || | Sbjct 624 GCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCGGGG 565 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||| ||||| || ||||| || || | ||| || |||| | |||| Sbjct 564 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCC 505 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||||| || || || || |||||||| || || ||||| Sbjct 504 ACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 455 >seq71761 Length=19511 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | ||||| ||||||||||| ||||| || |||| || ||||| Sbjct 7967 AACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCCAGAGTGCGACCGTCC 8026 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || ||||||| | |||||| || ||| | ||| || ||||| Sbjct 8027 TCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 8086 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||||| || || | ||| || |||| | ||| |||| |||||||| Sbjct 8087 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATGGTC 8146 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || || ||||| Sbjct 8147 TTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 >seq72113 Length=77669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||| || || | || ||||||| ||||| || || Sbjct 39991 GTAGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 39932 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| || || | |||||| ||||| || ||||| || Sbjct 39931 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 39872 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | |||| |||| |||||||| || || |||| ||| Sbjct 39871 ACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTC 39812 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 39811 TTGACGAAGATCTGCAT 39795 >seq71072 Length=54149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||||||||| ||||| || || | || ||||||| Sbjct 13839 CACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTC 13898 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| || ||| | |||||| ||||| Sbjct 13899 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 13958 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | | || |||| | |||| |||| |||||| || || Sbjct 13959 GATCTTCTGCTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTT 14018 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| ||||| || || ||||| Sbjct 14019 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 14048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414206935746934