Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq71540 125 2e-23 seq71838 116 9e-21 seq68691 113 1e-19 seq72197 111 4e-19 seq71072 109 1e-18 seq71924 100 7e-16 >seq71540 Length=49709 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || || || || | ||| | ||||| || || |||||||| ||||| | Sbjct 42959 CCCCCACGAAGTCTCAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 42900 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||||| || || || || ||||||||||| || | ||| || ||||| || Sbjct 42899 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGG 42840 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || || |||||| ||||| ||||||| ||| || || || ||| Sbjct 42839 ATGCCCTCCTTGTCTTGTATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACC 42780 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| || || || || || ||||| || ||||| Sbjct 42779 TCGAGGGTAATGGTCTTCCCCGTCAGCGTCTTAACAAAGATTTGCAT 42733 >seq71838 Length=148749 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || || || || || || || || || Sbjct 72846 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTCCTGCCATCCTCGAGCTGCTTGCCG 72905 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||||||||| ||| || Sbjct 72906 GCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 72964 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | ||| ||| | || ||||| || || |||||||| || ||||| || Sbjct 72965 AACATTTTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGT 73024 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 73025 CTTGACGAAGATCTGCAT 73042 >seq68691 Length=2609 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||||| || || | ||||| || ||||| || || Sbjct 615 GTAGACTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCG 556 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||| |||||| || Sbjct 555 GCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 496 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | || ||||| || ||||||||||| || || || || Sbjct 495 ACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTC 436 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 435 TTGACGAAGATCTGCAT 419 >seq72197 Length=52184 Score = 111 bits (122), Expect = 4e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 20847 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 20788 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || ||||| || | ||| || || || || || || || || ||||| ||||| ||||| Sbjct 20787 GCGAAAATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTYTGCTTC 20728 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 20727 -ACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATGGTCTTGCCGGTCAGGGT 20669 Query 104542 TTTTACAAATATCTGCATTTTGT 104564 || |||||||||||||| |||| Sbjct 20668 CTTAACAAATATCTGCATGTTGT 20646 >seq71072 Length=54149 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || ||||| || ||||| | || || | |||||| Sbjct 13836 AAGCACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTC 13895 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || || || || || || || || Sbjct 13896 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 13955 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||| ||||| ||||| || || || | ||| ||||| | || ||||| || ||||||| Sbjct 13956 CTGGATCTTCTGCTTC-ACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAG 14014 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || ||||| || || || || |||||||| Sbjct 14015 TCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 14048 >seq71924 Length=31871 Score = 100 bits (110), Expect = 7e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTGG 269197 ||| |||||| || ||||| || || ||||| ||||| ||| ||| | ||||||||| Sbjct 8806 TTGGTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCTCC-ATCTTTTGG 8748 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| ||||||| ||||| ||| | | || || ||||| | || ||| | ||| Sbjct 8747 CTGAAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGAC 8688 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGT 269284 || ||| | ||||||||||| |||||| Sbjct 8687 GAGGGTCTTCACTGCGACTTTGCTTGT 8661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150330171783988