Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq71761 105 6e-18 seq71072 98.7 8e-16 seq71540 95.1 1e-14 seq72303 93.3 4e-14 seq72113 89.7 4e-13 seq71838 86.0 5e-12 seq68691 86.0 5e-12 >seq71761 Length=19511 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||| || |||| | || || ||||||| |||||||| ||| || | Sbjct 7988 TCCTTTTGAATGTTGTAGTCGGCCAGAGTG-CGACCGTCCTCAAGCTGCTTGCCGGCGAA 8046 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | ||||||||| || || | | |||||||||| || |||||||| | Sbjct 8047 AATAAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTT 8106 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || || || | ||||| || Sbjct 8107 CTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGAC 8166 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 8167 GAAGATCTGCAT 8178 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| | ||| || || |||||| || |||||||| || || Sbjct 8179 ACCACCACGCAGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 8238 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || ||||||| |||||||||||| || | || | |||||||| || | Sbjct 8239 CAGAGTG-CGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGG 8297 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| || |||||||| | | | || || ||| | ||||| Sbjct 8298 GAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGA 8357 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || ||||| || || || ||||||||||| Sbjct 8358 CCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 8406 >seq71072 Length=54149 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || || | || ||||||| |||||||| ||| || | Sbjct 13857 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 13916 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | ||||||||| || |||||||| | Sbjct 13917 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 13976 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | |||||| ||||| || || || || ||||| ||||| || || Sbjct 13977 CTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTGAC 14036 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 14037 GAAGATCTGCAT 14048 >seq71540 Length=49709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || | ||| ||||| || || |||||||||||| ||||| || || Sbjct 42960 ACCCCCACGAAGTCTCAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGC 42901 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || ||||||| |||||||| || | |||| | |||||||| || ||| Sbjct 42900 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGG 42841 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||| || || ||||| | ||||||| || | ||||||| Sbjct 42840 GATGCCCTCCTTGTCTTGTATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCAC 42781 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || || || || || ||||| || ||||| ||| Sbjct 42780 CTCGAGGGTAATGGTCTTCCCCGTCAGCGTCTTAACAAAGATTTGCATGGTG 42729 >seq72303 Length=46806 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || |||| | || || ||||||| |||||||||||| || Sbjct 30514 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTG-CGACCGTCCTCAAGCTGCTTACCGGCGA 30456 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || || | | ||||||||| || |||||||| | Sbjct 30455 AGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGT 30396 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| ||| | || ||| ||||| || ||||| || || || || || || | Sbjct 30395 TCTCAATGGTGTCGCTGGATTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGA 30336 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 30335 CGAAGATCTGCAT 30323 >seq72113 Length=77669 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || |||| | || || ||||||| |||||||||||| || Sbjct 39530 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTG-CGACCGTCCTCAAGCTGCTTACCGGCGA 39472 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || || | | ||||||||| || |||||||| | Sbjct 39471 ATATAAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGT 39412 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | || || ||| | || ||| ||||| || ||||| || || || | ||| || | Sbjct 39411 TCTCGATCGTGTCGCTGGATTCCACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGA 39352 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 39351 CGAAGATCTGCAT 39339 >seq71838 Length=148749 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| || || | ||| || | ||||| |||| Sbjct 72840 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGG-GTC-CTGCCATCCTCGAGCT 72897 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || | |||||||||||| || | | ||||||||| ||| | Sbjct 72898 GCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCT 72957 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||||| | | | ||||| |||| |||||| ||| | || || || || || | Sbjct 72958 TCTGCTTAACATTTTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCG 73017 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || |||||||| Sbjct 73018 TAAGGGTCTTGACGAAGATCTGCAT 73042 >seq68691 Length=2609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| |||||||| || || | || |||||||||||||||| ||| | | Sbjct 382 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAA 323 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || ||| | | ||||||||| || || ||||| | Sbjct 322 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 263 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | |||||| ||||| || ||||| || || || || || || || Sbjct 262 CTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGAC 203 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 202 GAAGATCTGCAT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420879441998411