Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq72172 156 7e-34 seq71167 125 1e-24 seq66942 122 1e-23 >seq72172 Length=44471 Score = 156 bits (172), Expect = 7e-34 Identities = 188/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||| |||||||| || ||||||||||| || || ||| | || || ||||||||| Sbjct 9835 CTTCGAGACAACATCCAGGGCATCACCAAGCCCGCGATTCGTAGGCTTGCCCGTCGTGGT 9776 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| ||||||| || |||| || |||| ||||| ||| | ||| | ||| Sbjct 9775 GGTGTCAAGCGTATCTCTGGCATGATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTC 9716 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||||| | || || | ||| |||||||||||| | ||||||||| Sbjct 9715 CTCGAGAATGTTATTCGCGACGCAGTGACCTACACCGAGCACGCTCGCAGGAAGACTGTC 9656 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||| || | || | || ||||| | | || ||||| || Sbjct 9655 ACTGCGATGGACGTTGTCTACGCTCTCAAGAGGCAGGGCCGCACCCTCTACGGTTTCGGC 9596 Query 16694 AGTTAATCTTCTAATC 16709 ||||| || | |||| Sbjct 9595 GGTTAAGCTCCCAATC 9580 >seq71167 Length=49752 Score = 125 bits (138), Expect = 1e-24 Identities = 192/271 (71%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || ||| | || ||||| ||||| || ||||||||||| || Sbjct 28377 GCCAAGCGTCACAGAAAGGTC-CTTAGGGACAACATTCAAGGCATTACCAAGCCAGCCAT 28435 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | || |||||||||||||| || ||||| |||| || || |||| ||||||| Sbjct 28436 CCGTAGGCTTGCTCGTCGTGGTGGTGTAAAGCGAATCTCCGGCATGATCTACGAAGAGAC 28495 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | |||||| | | || || | || || | ||| || || Sbjct 28496 TCGAGGAGTACTGAAGGTGTTCCTCGAAAATGTCATTCGAGACGCGGTTACCTACACGGA 28555 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | |||||||| ||| | ||||| | || ||||| | || | ||||| Sbjct 28556 GCACGCCCGTAGGAAGACTGTAACCGCTATGGACGTAGTTTATGCTCTCAAGAGGCAAGG 28615 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | | || || ||||| ||||| || Sbjct 28616 GCGCACGCTCTACGGCTTTGGCGGTTAAGCT 28646 >seq66942 Length=8667 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || || |||||||| || || ||| | || || ||||||||||| ||| Sbjct 3635 GACAACATCCAGGGCATTACCAAGCCTGCCATTCGTAGGCTCGCCCGTCGTGGTGGTGTC 3694 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || || |||| ||||| | ||| | ||| | || | ||||| || Sbjct 3695 AAGCGTATCTCGGGCATGATCTACGAAGAAACTCGAGGTGTCCTCAAAGTTTTCCTAGAG 3754 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| | ||| |||||||||||| | ||||| ||||| || Sbjct 3755 AACGTCATTCGCGACGCTGTTACCTACACCGAGCACGCTCGCAGGAAGACCGTCACTGCC 3814 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||||| || | || | || || || | | || ||||| || ||||| Sbjct 3815 ATGGACGTCGTCTACGCTCTCAAGAGGCAGGGTCGCACCCTCTACGGTTTCGGTGGTTAA 3874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79008994115823