Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq71761 109 5e-19 seq71072 95.1 1e-14 seq71838 82.4 7e-11 >seq71761 Length=19511 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || ||||| || | || || |||| | || || | | Sbjct 8178 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTCGAGTCCAGC 8119 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || ||||| ||||| ||||| || || ||||| || Sbjct 8118 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 8059 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || |||||| || || || || | | | | | |||||| ||| Sbjct 8058 CAGCGTCTTATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 7999 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||| ||||||||| |||| || || || |||| || || ||| Sbjct 7998 ATTCAAAAGGAATCTACTCTCCACCTTGTGTTGCGACTCAGGGGTGGA 7951 >seq71072 Length=54149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | || ||| |||| | || || | | Sbjct 14048 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 13989 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || || ||||| ||||| || || || || ||||| || Sbjct 13988 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 13929 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | || |||||| ||| Sbjct 13928 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 13869 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || ||| |||| || || || Sbjct 13868 ATTCAAAAGGAGTCGACTCTCCACCTTGTGCT 13837 >seq71838 Length=148749 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26758 AGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAAT 26817 ||||| || ||||| | || || || || | || || || | |||||| | || Sbjct 73053 AGTCAGCCAGCATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACTATCACCCTTGAGG 72994 Query 26818 TAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATAC 26877 | || || |||||||||||| | || || || |||||| ||||| || || || | Sbjct 72993 TGGAGTCGTCCGACACCATCGAAAATGTTAAGCAGAAGATTCAGGACAAGGAGGGCATCC 72934 Query 26878 CTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCA 26937 |||| ||||| || | || || | || |||||| || ||||| |||| || | | || Sbjct 72933 CTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACCCTCG 72874 Query 26938 GCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || || || |||| || || || Sbjct 72873 CGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCT 72831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478229144711920