Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq71032 365 1e-95 seq71924 100 7e-16 >seq71032 Length=21228 Score = 365 bits (404), Expect = 1e-95 Identities = 1062/1623 (65%), Gaps = 23/1623 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| || || || | | |||||| || |||| | || ||| | ||||| Sbjct 14475 TTCACCCACGCTACCCCTACCCTCTTCAATGCCGGCACTCCTCGCCCGCAGCTTTCTTCG 14534 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | ||||| || || || || || || |||| ||||| || ||| | Sbjct 14535 TGCTTCCTCCTTACCATGAAAGAGGACTCAATTGAAGGGATCTACGACACTCTCAAGCAG 14594 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || || || ||| || || || || || | | | ||| | || || Sbjct 14595 TGTGCCCTCATCTCTAAGTCCGCTGGGGGTATCGGCCTTGCTGTACACCGCATCCGAGCT 14654 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| |||||| |||||||| || ||||||||| || |||| |||||||| Sbjct 14655 TCCAACTCTTACATCCGCGGCACCAACGGCACCTCGAATGGTCTCATTCCGATGCTTCGC 14714 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || | ||||| | ||||| ||||| ||||| || |||||||| || || ||| Sbjct 14715 GTATACAACGACACTGCTCGCTACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCCTTT 14774 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAA 363905 || || || || ||||| ||||||||||| || || || || |||||| ||| || Sbjct 14775 GCCATCTACCTTGAGCCCTGGCATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAGAAT 14834 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || || ||||| ||||| || ||||| ||||| | | |||||| | |||| Sbjct 14835 CAC-GGTAAGGAGGAGCACCGTGCTCGCGATCTCTTCTACGGTTTGTGGGTTCCCGACCT 14893 Query 363966 TTTTATGAAGCGCGTG---GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 ||| ||| |||| ||| || | ||| | ||||| ||||| ||||| |||| Sbjct 14894 TTTCATGGAGCGTGTGCGTGACGGCGGT---GACTGGTCGCTCTTCTGCCCCAACGAGGC 14950 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || ||||| | |||| ||||| ||||| | | || ||||| || || Sbjct 14951 CCCGGGTCTGTTCGATACTTGGGGAGACGAGTTTAAGCAGCTGTACGAGCGCTACGAGCA 15010 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 |||||| || || | || ||| | || ||||| | ||| | || || Sbjct 15011 GGAGGGTCGCGCCCGCCGTGTCGTGAAGGCTCAGGAACTCTGGTTCTCTATCCTCGAGTC 15070 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 ||||||||||| || || ||||| ||| | ||||| || || |||||||||||||| || Sbjct 15071 TCAGATTGAGACGGGCACTCCCTACATGCTCTACAAGGACTCCTGCAACCGCAAGTCTAA 15130 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||||||||||| || || || ||| | |||| | || || ||| | || | | ||| Sbjct 15131 CCAGCAGCACCTCGGCACCATCCAGTCGTCCAACTTGTGCACAGAGGTGATCCAGTTCAC 15190 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 | |||||||| || || || ||| | || || | || ||||| || | | Sbjct 15191 TTCCCCCGACGAAGTGGCTGTGTGCAACTTGGCCTCTCTTGCCCTTCCCAAATTCATCA- 15249 Query 364323 AGATGGTACT------TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 || ||| ||||||||| || | || | ||||| | | || Sbjct 15250 --CTGCGACTCGCGAATTTGACCACAAGAAGCTGCACGACGTGGTTAAGGTCGTAACCAA 15307 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 ||||| ||||||| || |||| || ||||| || | || || ||| ||| || Sbjct 15308 GAATCTTAACAAGGTCATTGACATCAACTATTACCCCGTGCCGGAGGCCCGCAATTCGAA 15367 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 ||||||||| | ||||| || | || || ||||| ||||| ||||| || ||| || | Sbjct 15368 TATGCGTCACAGGCCGATCGGCATAGGCGTGCAGGGACTCGCCGACGTATTCATGCTGAT 15427 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | | | || ||||| || || | || || | ||||| || || || Sbjct 15428 GCGCTTCCCTTGGGAGAGCCCTGAGGCCCGCGAGCTGAACCGCGCCATCTTCGAGACCAT 15487 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC-AAAAACCAAGGGAAAGTACTCTA 364615 ||| ||| || | || || || || || |||| || | ||| || ||||| | Sbjct 15488 CTATCATGCTGCCCTCACCGCCTCCTGCGAGATGGCGAAGGAACAA-GGCGCCTACTCGA 15546 Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 |||| ||||| || || ||| |||| ||||| || || ||||| ||| | Sbjct 15547 CTTACGAGGGTTCTCCCGCTTCCAAGGGCCTGCTCCAGCCCGACCTTTGGAACGTCGTTC 15606 Query 364676 CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTC-GC 364734 | || | ||| ||| | ||||| || | ||| || || || || ||| ||| | Sbjct 15607 CCTCGGACCGCTGGGATTGGGACACTTTGCGTGCCGACATTGCTCGTCACGGT-CTCAGG 15665 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | || || |||||||| || || || | ||||||||||| || ||| Sbjct 15666 AACTCGCTGCTCGTCGCTCCTATGCCCACTGCCTCGACCTCTCAGATCCTCGGCAATAAC 15725 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| | || | ||||| | ||| | || || ||| Sbjct 15726 GAGTGCTTCGAGCCCTACACCTCCAACATCTACACTCGCCGCATCCTTGCTGGTGACTTT 15785 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | || || || || |||| || || ||| || ||||| |||||| | | Sbjct 15786 ACCGTCGTCAACGAGCACCTGCTCCGTGACCTTCAGGAGCGCGGCCTGTGGTCCCCCGCC 15845 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA-TTTCCAGA 364973 | |||||| | | | ||| || ||||| |||||| || || |||| | || || Sbjct 15846 CTCAAGAACAAGCTGGTGGCCCACAACGGTTCGGTGCAGCGCA-TCGAGGAGATACCTGA 15904 Query 364974 AGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATAT 365033 ||||| ||| ||||||| || || ||||| ||| | ||| | || || || Sbjct 15905 CGATCTCAAGAAGCTTTACAAGACAGTGTGGGAGATTCCTCAGCGTGTAGTAATCGACAT 15964 Query 365034 GGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCA 365093 ||| ||||||||| |||| ||| || || || || | ||| | | |||| | Sbjct 15965 GGCTGCCGATCGCTCCGCTTATATTGACCAAAGTCAATCTCTCAACATTTACATGGGCGA 16024 Query 365094 GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGAC 365153 ||| | | |||||||||||| |||||||| ||||||| ||||| ||||| ||||| Sbjct 16025 GCCTTCTTTCGCCAAGCTTACGTCCATGCACTTCTACGCCTGGAATAAGGGTCTGAAGAC 16084 Query 365154 AGG 365156 || Sbjct 16085 TGG 16087 >seq71924 Length=31871 Score = 100 bits (110), Expect = 7e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 ||||| || ||||| |||| ||||||| || || ||||||||||| || || ||| || Sbjct 8822 TTCGCTGAGCGTCTCATTGGTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGC-TT 8764 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 || | ||||||||||| || || || | | ||||| || || | ||||| || || Sbjct 8763 CTGCTCCATCTTTTGGCTGAAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGA 8704 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 | | || ||||| || ||||||||||| ||| ||||| ||| | || ||| Sbjct 8703 GCTCATCAGCCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCTCCTCTAT 8652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302144392925402