Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq71761 118 9e-22 seq71072 98.7 9e-16 seq68691 98.7 9e-16 seq71838 95.1 1e-14 seq68586 86.0 5e-12 >seq71761 Length=19511 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | ||||| |||| |||||| ||| | Sbjct 8178 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTCGAGTCCAGC 8119 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| |||||||| || ||||| || Sbjct 8118 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 8059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || ||||||||| || || || | | | | ||| || ||| Sbjct 8058 CAGCGTCTTATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 7999 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| |||||||| | || | ||||| || | || || ||| Sbjct 7998 ATTCAAAAGGAATCTACTCTCCACCTTGTGTTGCGACTCAGGGGTGGA 7951 >seq71072 Length=54149 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| || ||| ||| | Sbjct 14048 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 13989 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || || ||||| ||||| || ||||| || ||||| || Sbjct 13988 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 13929 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | || ||| || ||| Sbjct 13928 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 13869 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 13868 ATTCAAAAGGAGTCGAC 13852 >seq68691 Length=2609 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| || ||| ||| | Sbjct 419 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 478 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||||| ||||| || ||||| || ||||| || Sbjct 479 GACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 538 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||||||||| || | | | | || || || ||| Sbjct 539 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCGCTGACTACAAC 598 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 599 ATCCAAAAGGAGTCTAC 615 >seq71838 Length=148749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| | | Sbjct 73042 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 72983 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || |||||| ||||| || ||||| ||||| ||||| Sbjct 72982 GACACCATCGAAAATGTTAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 72923 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| ||||| |||| ||| | | || || || ||| Sbjct 72922 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACCCTCGCGGACTACAAC 72863 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 72862 ATCCAGAAGGAGTCCAC 72846 >seq68586 Length=2644 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| ||| | Sbjct 227 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCCAGC 286 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || || ||||| ||||| || ||||| || ||||| || Sbjct 287 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 346 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||||||||| || | | | | | || || || ||| Sbjct 347 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCTGACTACAAC 406 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 407 ATCCAGAAGGAGTCTAC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429556577583705