Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq71761 100 2e-16 seq68691 89.7 4e-13 seq71072 86.0 5e-12 seq72197 84.2 2e-11 seq72113 84.2 2e-11 seq68586 84.2 2e-11 >seq71761 Length=19511 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||||||| | || || || |||||||| |||| ||||||||| Sbjct 8178 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTCGAGTCCAGC 8119 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || || || || || || |||||| ||||| || || Sbjct 8118 GACAC-GATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCA 8060 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||||| || ||||| || | || || | || ||||||| || || Sbjct 8059 GCAGCGTCTTATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAA 8000 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||| || |||||| | || | |||||| || Sbjct 7999 CATTCAAAAGGAATCTACTCTCCACCTTGTGTTGCGA 7963 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| ||||| || ||||| || || |||||||| |||| |||||| Sbjct 8409 AACATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATTACTCTCGAGGTCGAGTCC 8350 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 |||||||| | | || || || || || || || || || |||||| | ||| || Sbjct 8349 AGCGACAC-GATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 8291 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| | ||||| | || || || || | || || | || ||||||| || Sbjct 8290 CCAGCAGCGCCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTA 8231 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || ||||| ||| | ||| | ||| Sbjct 8230 CAACATCCAGAAGGAGTCGACTCTCCATCTCGTG 8197 >seq68691 Length=2609 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || ||||| || || || |||||| |||| |||||||||| Sbjct 419 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 478 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||| || || || || ||| | ||| || ||| Sbjct 479 GACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 538 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| ||| | || || | | || | || || || ||| Sbjct 539 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCGCTGACTACAAC 598 Query 115466 ATTCAAAAAGAGTCTAC 115482 || ||||| |||||||| Sbjct 599 ATCCAAAAGGAGTCTAC 615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || ||||| || |||||||| |||| |||||||||| Sbjct 191 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 250 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || ||||| || || || || ||| |||| || || Sbjct 251 GACAC-GATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 309 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| ||||| || | || || | ||| | ||||| || || Sbjct 310 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCGCCGACTACAA 369 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| ||||| ||||| ||| Sbjct 370 CATCCAAAAGGAGTCGACT 388 >seq71072 Length=54149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || ||||| || ||||| ||| | || |||||||||| Sbjct 14276 ATGCAGATCTTCGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCCAGC 14217 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | ||||| ||||| || || || || ||| |||| || ||| Sbjct 14216 GACACCATTGAGAACGTAAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 14157 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | |||||||| || | || || | | ||| | ||||| || ||| Sbjct 14156 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 14097 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 14096 ATCCAGAAGGAGTCGAC 14080 >seq72197 Length=52184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| || || || || || || ||||||||| |||| ||||||| Sbjct 20648 AACATGCAGATATTTGTTAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTGGAGTCC 20707 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 |||||||| | | || || || || || || || || || || ||| ||||| || Sbjct 20708 AGCGACAC-GATCGAGAACGTGAAGCARAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 20766 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| | || |||| || ||||| || | || || | | ||| | || || || Sbjct 20767 CCAGCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCTGACTA 20826 Query 115462 TAACATTCAAAAAGAGTCTACT 115483 ||||| || || ||||| ||| Sbjct 20827 CAACATCCAGAAGGAGTCGACT 20848 >seq72113 Length=77669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || ||||| || |||||||| |||| |||||||||| Sbjct 39567 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 39626 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || ||||| || || || || ||| ||||| || || Sbjct 39627 GACAC-GATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 39685 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | || ||||| || | || || | | ||| | || || || || Sbjct 39686 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAA 39745 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || |||||||| Sbjct 39746 CATCCAGAAGGAGTCTAC 39763 >seq68586 Length=2644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||||||| | || || || |||||||| |||| |||||||||| Sbjct 455 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 514 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || || || || || || || ||| | ||| || || Sbjct 515 GACAC-GATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 573 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||||| || ||||| || | || || | ||| | || || || || Sbjct 574 GCAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCTGACTACAA 633 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| ||||| |||||||| Sbjct 634 CATCCAAAAGGAGTCTAC 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424968630065320