Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq39288 127 1e-24 seq71761 113 3e-20 seq68869 105 4e-18 seq68868 105 4e-18 seq68691 102 5e-17 seq72197 100 2e-16 seq72303 95.1 8e-15 seq72113 89.7 3e-13 seq71072 84.2 1e-11 >seq39288 Length=598 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 483 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 424 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 423 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 389 >seq71761 Length=19511 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | |||||||| | || ||||| ||||||||||| ||||| || | | Sbjct 7952 CCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCC 8011 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || || ||||| || || || || || || |||| |||| Sbjct 8012 AGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGG 8071 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || |||||||| |||| || || || | || || Sbjct 8072 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACC 8131 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 8132 TCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||| | ||| ||||| |||||| || || ||||| || | Sbjct 8178 TACCACCACGCAGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 8237 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || |||| || | || || ||||| || || ||||| || || |||| || Sbjct 8238 CCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGG 8297 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || |||||||| |||| || || || | || | Sbjct 8298 GAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGA 8357 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | ||||| || || || || | ||| || ||||| ||||||||||| Sbjct 8358 CCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGTT 8409 >seq68869 Length=3502 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3392 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3333 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 3332 GCTACCAATATTTAGCCTT 3314 >seq68868 Length=3502 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3392 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3333 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 3332 GCTACCAATATTTAGCCTT 3314 >seq68691 Length=2609 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||| | || ||||| ||||||||| || ||||| || | Sbjct 419 TACCACCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGG 360 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || |||| || | || || |||||||| || ||||| || || |||| | Sbjct 359 CGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCG 300 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || ||||||||||| |||| || || || | || | Sbjct 299 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCCA 240 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || ||||| | ||| || ||||| |||||||| Sbjct 239 CCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 191 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||| || ||||| |||| | || |||| || | ||| || |||||||| Sbjct 610 CTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 551 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || |||| ||| | ||| || |||||| || ||||||||||| || Sbjct 550 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 491 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || | || || | || || || | |||||||| || || || | ||| || || Sbjct 490 CTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGAC 431 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 430 GAAGATCTGCAT 419 >seq72197 Length=52184 Score = 100 bits (110), Expect = 2e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||| | || ||||| |||||| || || ||||| |||| Sbjct 20879 TACCACCACGCAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 20820 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || |||| || | || || ||||| || || ||||| || || |||| || Sbjct 20819 CAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGGG 20760 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || || |||||||| |||| || || || | || | Sbjct 20759 GGATGCCCTCCTTGTCCTGGATCTTYTGCTTCACGTTCTCGATCGTGTCGCTGGACTCCA 20700 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | ||||| || || || |||| ||| || || |||||||||||||| Sbjct 20699 CCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTAACAAATATCTGCATGTT 20648 >seq72303 Length=46806 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||| | || ||||| |||||| || || ||||| || | Sbjct 30551 TACCACCACGCAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 30492 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || |||| || | || || ||||| || || ||||| || || |||| || Sbjct 30491 CCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCGGGGG 30432 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| || || |||||||| |||| | || || | ||| | Sbjct 30431 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCGCTGGATTCCA 30372 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || ||||| | ||| || ||||| ||||||||||| Sbjct 30371 CCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATGTT 30320 >seq72113 Length=77669 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| |||| | || |||| || | || || ||||| || Sbjct 39758 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 39699 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || |||| ||||| ||| || |||||| || ||||||||||| || Sbjct 39698 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 39639 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || || || || | || || || | ||||| || || ||||| | ||| || || Sbjct 39638 CTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGAC 39579 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 39578 GAAGATCTGCAT 39567 >seq71072 Length=54149 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| || ||||| | || || | ||| | || ||||| |||||||||||| |||| Sbjct 13814 ATCAGTTGCCACCGCGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGT 13873 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | || | | || |||| || | || || ||||| || || ||||| || || | Sbjct 13874 AGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 13933 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 ||| ||| | ||| || |||||| || || |||||||| |||| | || || | Sbjct 13934 CGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCGCTGG 13993 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || | |||||||| || || || | || || ||||| ||||||||| Sbjct 13994 ACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATG 14049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334651606060541