Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq71924 223 4e-53 >seq71924 Length=31871 Score = 223 bits (246), Expect = 4e-53 Identities = 389/561 (69%), Gaps = 10/561 (2%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || |||||||| ||||||||||| | || || | ||||||||||| | ||| Sbjct 8661 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAG 8720 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGA 32778 ||||||||| ||||| ||||| || |||||||| ||||| ||| | | | || || |||| Sbjct 8721 TCCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGA-GCAGAAGCTGCCCGAGAAGA 8779 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-----CCGGCGCTGTC 32833 |||| || ||||| || ||||| |||| || | ||| | | | ||| || | Sbjct 8780 AAATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTC-C 8838 Query 32834 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 || |||||||| |||||| |||||||||||||| || |||||| || || || Sbjct 8839 TTGCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATG 8898 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || ||||| | || || || || || || || || || || | ||| | Sbjct 8899 GCGCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAA 8958 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| | |||||| Sbjct 8959 TACATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCG 9018 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | || || ||||| | || || | || | ||| ||| || || |||||||| Sbjct 9019 GGAACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTA 9078 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 || || || || |||| || || || || || | || ||||| || || | Sbjct 9079 GCCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCC 9138 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || | ||| | || | || ||| |||||||| | ||||| || || ||||| ||| Sbjct 9139 CAGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCC 9198 Query 33192 TTTTTATACATATTCCAGATG 33212 || || || | | ||||||| Sbjct 9199 TTCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633058475915600