Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq71540 141 8e-29 seq72113 116 3e-21 seq21823 114 1e-20 seq68691 107 2e-18 seq68586 91.5 1e-13 >seq71540 Length=49709 Score = 141 bits (156), Expect = 8e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| ||||| ||||| |||| || || |||| || |||| |||||||| Sbjct 42730 ACCATGCAAATCTTTGTTAAGACGCTGACGGGGAAGACCATTACCCTCGAGGTGGAGTCT 42789 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || | |||||||| || ||||| || || || || |||||| Sbjct 42790 TCAGACACCATAGAAAACGTAAAGCAAAAGATACAAGACAAGGAGGGCATCCCGCCTGAC 42849 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||||||||| ||||| || | || || | ||||| ||| ||| ||| Sbjct 42850 CAGCAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCCGACTAC 42909 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||||||| || || || || ||||| ||||| || || Sbjct 42910 AATATTCAAAAGGAGTCTACCCTCCATTTGGTGCTGAGACT 42950 >seq72113 Length=77669 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || |||| || |||| ||||| || Sbjct 39339 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTGGAATCCAGC 39398 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| || || ||||| || ||||| Sbjct 39399 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 39458 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || ||||| || || | || || | ||||||| ||| ||| ||||| Sbjct 39459 CAGCGCCTTATATTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 39518 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 39519 ATCCAGAAGGAGTCAACTCTCCACCTCGTGCT 39550 >seq21823 Length=199 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || || || ||||||||||| || || |||| || |||| |||||||| || Sbjct 199 GCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTGGAGTCCAGCGA 140 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| |||||| |||||||| || ||| ||||| || || || || |||||||| || Sbjct 139 CACGATCGAGAACCTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCA 80 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 ||| ||||||| |||||||| || | || || | ||||| | | ||| ||||| || Sbjct 79 GCGCCTTATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACAT 20 Query 25181 TCAAAAAGAATCCACGCT 25198 || || || || || || Sbjct 19 CCAGAAGGAGTCGACTCT 2 >seq68691 Length=2609 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||| || |||| |||||||| Sbjct 191 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 250 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||||||||| ||| ||||| || || || || || ||||| Sbjct 251 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 310 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | |||||| | | ||| ||||| Sbjct 311 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCGCCGACTACAAC 370 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || || | ||||| Sbjct 371 ATCCAAAAGGAGTCGACTCTCCACCTCGTGCT 402 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | || || |||| |||||||| Sbjct 419 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 478 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||||||||| ||| ||||| || || ||||| || ||||| Sbjct 479 GACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 538 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||| | || || | ||||| | | || ||||| Sbjct 539 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCGCTGACTACAAC 598 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || || || || Sbjct 599 ATCCAAAAGGAGTCTACCCTCCA 621 >seq68586 Length=2644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||||| Sbjct 227 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCCAGC 286 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 287 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 346 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||| | || || | ||||| | | || ||||| Sbjct 347 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCTGACTACAAC 406 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || || || || || || | |||||| Sbjct 407 ATCCAGAAGGAGTCTACCCTCCACCTTGTGCTA 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432945584112965