Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq71924 131 2e-25 >seq71924 Length=31871 Score = 131 bits (144), Expect = 2e-25 Identities = 396/605 (65%), Gaps = 9/605 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||| || | ||| ||||| || || | ||| ||| || | | Sbjct 8662 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGT 8721 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaa 93210 || || | || ||||| ||||| |||||||| || || ||| || || || || || || Sbjct 8722 CCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGA-GCAGAAGCTGCCCGAGAAGAA 8780 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC--GGAATTACT- 93267 || || || ||||| ||||| | | | ||| || || || | | || | || Sbjct 8781 AATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTCCTT 8840 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || |||||| || | |||||| ||||| || || || | |||| | |||||||| || Sbjct 8841 GCCGATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATGGC 8900 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || ||| ||| |||| | || | ||| || ||||| | || ||||| Sbjct 8901 GCGGAAGAGGCGATCCTTCTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAATA 8960 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||| || || || | || || || || ||||||||||| ||||| || | || || | Sbjct 8961 CATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCGGG 9020 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | |||||||| | || | | ||||||| ||| || ||||| || || Sbjct 9021 AACTTGCACTTCCTTCATGAAGCGAACAGCGAGATTCTCAGCAACAATACCGTCACTAGC 9080 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 || || || |||| | ||||| || || || ||||| || | | ||| |||| Sbjct 9081 CGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCCCA 9140 Query 93568 ATCGGAT--AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 | ||| | || | ||||||||||||||| ||||||| || || || || || Sbjct 9141 GT--GATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCC 9198 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || ||||| | ||||| ||| || | | ||| || |||| || |||||||| ||| Sbjct 9199 TTCTTGTAGAACTCCCAGATGCGCTGGTGATTAATGGGGAATAGCACGAAACGATTCGGG 9258 Query 93686 TTATC 93690 || || Sbjct 9259 TTGTC 9263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556356764407640