Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq71540 89.7 4e-13 >seq71540 Length=49709 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | ||||| || ||||||||| | || ||| | || Sbjct 42733 ATGCAAATCTTTGTTAAGACGCTGACGGGGAAGACCATTACCCTCGAGGTGGAGTCTTCA 42792 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | |||||||| || || || ||||| | || |||| Sbjct 42793 GACACCATAGAAAACGTAAAGCAAAAGATACAAGACAAGGAGGGCATCCCGCCTGACCAG 42852 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| ||||||| ||||||||||| || || || || || ||||||| |||||| Sbjct 42853 CAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCCGACTACAAT 42912 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||| ||||| || ||| |||| Sbjct 42913 ATTCAAAAGGAGTCTACCCTCCATTTGGT 42941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357808751618494