Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq71761 123 2e-23 seq71072 118 9e-22 seq68691 102 7e-17 seq72113 98.7 8e-16 seq72197 89.7 4e-13 >seq71761 Length=19511 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| ||| || | || | |||||||| |||||||||||||| ||| || ||| ||| Sbjct 7961 AGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCCAGAGTGCGA 8020 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 || ||||| || || || ||| | || |||||||| ||||| || || |||||||| Sbjct 8021 CCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGGATGCCTTCC 8080 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || || | | || | |||||| |||| ||||| || | || Sbjct 8081 TTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTA 8140 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || ||||| |||| ||||| || || |||||||| Sbjct 8141 ATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || || || || |||||||| ||| Sbjct 8177 ATACCACCACGCAGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 8236 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| || ||||| || ||||| ||| |||| || ||||| ||||| || Sbjct 8237 GCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGG 8296 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || || | | || | |||||| |||| ||| Sbjct 8297 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCG 8356 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || || || || || |||||||||||| Sbjct 8357 ACCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATG 8407 >seq71072 Length=54149 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| ||| | || ||| || || || || || || Sbjct 13852 GTCGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 13911 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 13912 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 13971 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| |||| || || || | ||| | || |||||||| ||||| Sbjct 13972 ACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTC 14031 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 14032 TTGACGAAGATCTGCATG 14049 >seq68691 Length=2609 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 192 ATACCACCACGNAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 133 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| || ||||| || ||||| ||| |||| || ||||| ||||| || Sbjct 132 GCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGG 73 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||||| || | | |||| ||||||| |||| || Sbjct 72 GGAATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCAATGGTGTCGCTGGACTCC 13 Query 114333 ACGTCCACGGT 114343 || || | ||| Sbjct 12 ACCTCGAGGGT 2 >seq72113 Length=77669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| |||||||| || | || ||| || || || || || || Sbjct 39991 GTAGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 39932 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| ||||||||||| || ||||| ||||| || || Sbjct 39931 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 39872 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| |||| || || || | || | || ||||| || ||||| Sbjct 39871 ACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTC 39812 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 39811 TTGACGAAGATCTGCAT 39795 >seq72197 Length=52184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| | ||||| ||||| ||||| || || ||||| || ||| Sbjct 20805 TCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 20746 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | |||||| |||| || || || | ||| | Sbjct 20745 TCCTGGATCTTYTGCTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATG 20686 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||||||||| || || ||||| ||||||||| Sbjct 20685 GTCTTGCCGGTCAGGGTCTTAACAAATATCTGCATG 20650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419763627584532