Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq71924 361 1e-94 seq71032 313 5e-80 >seq71924 Length=31871 Score = 361 bits (400), Expect = 1e-94 Identities = 604/861 (70%), Gaps = 18/861 (2%) Strand=Plus/Minus Query 42291 CACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAG 42350 |||||| ||||||| | ||||||||||| || ||| |||||| ||||| || Sbjct 9227 CACCAGCGCATCTGGGAGTTCTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAAGAA 9168 Query 42351 ATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTC 42410 | || || | || ||| | ||||| || || || || |||| ||| ||| Sbjct 9167 GTCGATCTAGGCAGCGACTTGAATCACTGGGCCTCGCTCACTAAGGACGAGAAGCACTTC 9108 Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 | || || | |||||||||||||| || |||||| || || |||||| || || Sbjct 9107 ATTAAGCACGTGCTGGCCTTCTTCGCGGCTAGTGACGGTATTGTTGCTGAGAATCTCGCT 9048 Query 42471 ACCAGGTTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 | |||||||| || |||| ||| | |||||||| |||||||| || ||||| || Sbjct 9047 GTTCGCTTCATGAAGGAAGTGCAAGTTC-CCGAGGCGCGTTGCTTCTATGGATTCCAAAT 8989 Query 42530 AGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGA 42589 ||||| || ||| | ||||| ||| |||| || || || |||| ||| || ||| Sbjct 8988 CGCCATTGAAAACATTCACTCGGAGATGTATTCCCTTCTTATCGACACCTACGTCAAGGA 8929 Query 42590 TCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 || ||||| | | || ||| ||||| || || |||| | |||| ||||| Sbjct 8928 CCCTATCGAGAAGGATCGCCTCTTCCGCGCCATCGAAACTGTGCCTTCAGTCAAAAAGAA 8869 Query 42650 GGCGGACTGGGCGCTCAACTGGATCG----AGAGTCCCGACGCAACGTTCGGCGAGAGGC 42705 ||| || ||||| |||| ||||||| ||| || | | || |||| ||| | | Sbjct 8868 GGCCGAGTGGGCTATCAAGTGGATCGGCAAGGAGGGCC-AGGAGACCTTCGCTGAGCGTC 8810 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | | | ||| | ||||| |||||||| |||||||||||| |||| ||||||||| | Sbjct 8809 TCATTGGTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCTCCATCTTTT 8750 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| || ||| || |||||||||||| |||| || ||||| ||||||||| | Sbjct 8749 GGCTGAAGAAGCGAGGCCTC-ATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGT 8691 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 |||||||| || || | |||||||| || |||| ||| ||| ||| |||| Sbjct 8690 GACGAGGGTCTTCACTGCGACTTTGCTTGTCTCC---TCTATAGCATGCTCGTCAACAAA 8634 Query 42885 CCCTCGAAGGAGCGGGTCC--GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 |||||| || || ||| | | ||||| ||||| || ||||| |||||||||| Sbjct 8633 CCCTCGCCCGA--GGTTCCTAAGACGATCATTCTCGAGGCTGTCGAGATAGAGAAGGAGT 8576 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 || |||| |||| || |||||| | || ||||||||||| ||| ||||||||| ||| Sbjct 8575 TCGTCACCGAGTCTCTCCCCGTGGCTCTCATCGGCATGAACGCCGAGCTCATGTGCCAGT 8516 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 ||||| | | ||||||||||| |||||| ||| | ||| | | || || | | | || Sbjct 8515 ACATCGAATTCGTCGCCGACCGTCTCCTCGTGGCTCTTGGCTGTGAGAAGCAT-TTCCAC 8457 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | | | ||||||| || |||||| |||||| | ||||||||||||||||| ||| Sbjct 8456 AAGACCAACCCCTTCCCCTGGATGGAGCTTATCTCGCTCGAGGGCAAGACCAACTTCTTC 8397 Query 43122 GAGAAGCGCGTCGCCGACTAC 43142 ||| || || | ||| ||| Sbjct 8396 GAGCGTCGTGTTGGCGAGTAC 8376 >seq71032 Length=21228 Score = 313 bits (346), Expect = 5e-80 Identities = 1258/1958 (64%), Gaps = 86/1958 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || | | |||| ||| | ||||||||||||||| ||||| Sbjct 16138 ACGGTGAACTGGATGGCGTTGGCAGCGGGTCGGGTTCGCAGGTAGTACATGCCAGTCTTC 16079 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||||||| || |||||||| ||| ||||| | || || Sbjct 16078 AGACCCTTATTCCAGGCGTAGAAGTGCATGGACGTAAGCTTGGCGAAA--GAA-----GG 16026 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || | | |||||| || || || ||||| | | | | || || Sbjct 16025 -----CTCGCCCATGTAAATGTTGAGAGATTGACTTTGGTCAATATAAGCGGAGCGATCG 15971 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || |||||| ||| | | ||||| ||||| || | |||||||| | |||| Sbjct 15970 GCAGCCATGTCGATTACTACACGCTGAGGAATCTCCCACACTGTCTTGTAAAGCTTCTTG 15911 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || | || || | | | |||||| ||||||||| || |||||| | | |||| | | Sbjct 15910 AGATCGTCAGGTATCTCCTCGATGCGCTGCACCGAACCGTTGTGGGCCACCAGCTTGTTC 15851 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTC---GACCAGGTGCCTGTTC 244093 | | | ||||||||| ||||||| | || || ||||||| ||| Sbjct 15850 TTGAGGGCGGGGGACCACAGGCC---GCGCTCCTGAAGGTCACGGAGCAGGTGCTCGTTG 15794 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || || ||| || || | || | |||||| ||||| |||| | || |||||| Sbjct 15793 ACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAGGTGTAGGGCTCG 15734 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| | ||||| || ||||| | || ||||| ||||| || | || ||| Sbjct 15733 AAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATAGGAGCGACGAGC 15674 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA---GTCCCAC 244270 || |||||| | ||||| | | | | | | || || | | |||||| Sbjct 15673 AGCGAGTTCCTGAGACCGTGAC-------GAGCAATGTCGGCACG--CAAAGTGTCCCA- 15624 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 || || || ||||| | | || | ||| | ||| ||| ||||| |||||| Sbjct 15623 ATCCC--AGCGGTCCGAGGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTGGAA 15566 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 |||| |||||||| |||| ||||| || | || |||| || ||| || Sbjct 15565 GCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGGCG 15506 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||||| || | ||||||||||||||||| ||||| |||||||||| | Sbjct 15505 GTGAGGGCAGCATGATAGATGGTCTCGAAGATGGCGCGGTTCAGCTCGCGGGCCTCAGGG 15446 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | | |||| || ||||| |||||| |||||||| |||||||||||||| |||||| Sbjct 15445 CTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATGCCG 15386 Query 244511 ATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || || ||||| ||| | || || ||| ||| || |||||||||||| ||||| | Sbjct 15385 ATCGGCCTGTGACGCATATTCGAATTGCG---GGCCTCCGGCACGGGGTAATAGTTGATG 15329 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || |||||||| || || ||| | | || |||||| |||| || | Sbjct 15328 TCAATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGTGG 15269 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || | ||| || | | | |||| || | | ||||| | | Sbjct 15268 TCAAATTCGC---GAGTCGCAGTGATG------------AATTTGGGAAGGGCAAGAGAG 15224 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || ||||| || || | | ||| |||||| | ||| ||||| | | Sbjct 15223 GCCAAGTTGCACACAGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAG 15164 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || ||| ||||||||| |||||||| || || |||||| |||||||| ||||||| Sbjct 15163 TTGGACGACTGGATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTG 15104 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 ||||||||| |||| || ||||| | ||| | |||||| | |||||| ||| Sbjct 15103 TAGAGCATGTAGGGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCC 15044 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||| || | ||| || ||||| ||||||||| |||||| || Sbjct 15043 TGAGCCTTCACGACACGGCGGGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTTA 14984 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCC--GGGGCACGACGCCGGGCACATGAGACTCC 244985 |||||| ||||| ||| || || ||| | || | ||||| | ||| || Sbjct 14983 AACTCGTCTCCCCAAGTATCGAACAGACCCGGGGCCTCGTTG--GGGCAGAAGAGCGACC 14926 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || |||||||| || | || |||||| |||||||| | ||| | | | ||||| Sbjct 14925 AGTCACCGCCGTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGA 14866 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 | || | | | ||||| ||| || ||| |||||| | ||||| | || || ||| Sbjct 14865 GATCGCGAGCACGGTGCTCCTCCTTACC-GTGATTCTTCTTGAGCTCGAGGAATTCGAAG 14807 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 | ||| | ||||||||||| | ||||| || | ||| || ||||| ||| || Sbjct 14806 ATATCGGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCT 14747 Query 245165 TGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 |||| || | | ||||| ||||| | | ||| || | || | | || || Sbjct 14746 TGGT----CAACGTAGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATT 14691 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC-- 245278 ||| |||||||||||| |||||| | | ||| || ||| | || || Sbjct 14690 CGAGGTGCCGTTGGTGCCGCGGATGTAAGAG---TTGGAAGCTCGGATGC-GGTGTACAG 14635 Query 245279 --ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | ||| | || || ||| ||| ||||||||||| || ||||| ||||| | Sbjct 14634 CAAGGCCGATACCCCCAGCGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGA 14575 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCTTG 245395 | || || || |||| |||||| | || || ||||| || || ||||| |||| | Sbjct 14574 TCCCTTCAATTGAGTCCTCTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAG 14515 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAA 245454 | | ||| | ||||| || || ||| | |||||||| ||| || ||| ||||| | Sbjct 14514 GAG-TGCCGGCATTGAAGAGGGTAGGGGTAGCGTGGGTGAAG-AGTTGCTGGGAGAGAAG 14457 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCAT 245514 |||| || | || | |||| || ||||| ||| | | ||| | ||| Sbjct 14456 GTCGTAGGTTTCGATAACAGCGGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCAT 14397 Query 245515 GAGGGTGTGCTGGGGCGTCTCGATG--GGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGC 245572 || | ||||| || |||||| | | || | | ||||| | ||||| ||| Sbjct 14396 CAGCATATGCTGTGGTCTCTCGACGATCTTGCCATCGAT--CTTGAAAAGATAGGAACGC 14339 Query 245573 TCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCG 245632 ||||| ||||| || || ||||| | |||| |||| | | | ||||||| || Sbjct 14338 TCGAGAGTCTTAAAACCGAAGTATGTGTAGTTGTAGTCACGCTCATACTTGACGGCAGCC 14279 Query 245633 TCGAGTCTCTCGGCGTGCTT-CTGACTGACCTCGTAAA 245669 || || | ||| |||| || | || ||||||| ||| Sbjct 14278 TCTAGAGTTTCGCCGTGTTTGCAGA-GGACCTCGAAAA 14242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943484443177360