Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq71924 125 2e-23 >seq71924 Length=31871 Score = 125 bits (138), Expect = 2e-23 Identities = 293/436 (67%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGC----GTTGAAGGTATTCTGTTTTCCGGGAG 243344 || |||||||||||| | ||| | ||| || || || ||| | || || || || Sbjct 8822 TTCGCTGAGCGTCTCAT----TGGTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAG 8767 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| |||||||||||||| ||| ||| | ||||| || ||| | || || Sbjct 8766 CTTCTGCTCCATCTTTTGGCTGAAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAA 8707 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| ||||||| || |||||||| |||||| | || | | || | ||| | Sbjct 8706 CGAGCTCATCAGCCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCTCCTCTATAGCAT 8647 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGT--CAAACAA-ATCATCACAGAAGCAGTTGA 243521 |||| ||||| | | ||| ||| | || | ||||| || || || || Sbjct 8646 GCTCGTCAACAAACCCTCGCCCGA---GGTTCCTAAGACGATCATTCTCGAGGCTGTCGA 8590 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCA-TGCCGGCTTATTGGCATGAACTCTG 243580 | || ||||| ||| | ||| || | || || | || || ||||||||| | | Sbjct 8589 GATAGAGAAGGAGTTCGTCACCGAGTCTCTCCCCGTGGCT-CTCATCGGCATGAACGCCG 8531 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | |||||| | ||||||||||||||||| |||||||| | || | || ||||| | || Sbjct 8530 AGCTCATGTGCCAGTACATCGAATTCGTCGCCGACCGTCTCCTCGTGGCTCTTGGCTGTG 8471 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 |||| | | || | |||||||| ||| |||||||| || ||||| | || | Sbjct 8470 AGAAGCATTTCCACAAGACCAACCCCTTCCCCTGGATGGAGCTTATCTCGCTCGAGGGCA 8411 Query 243701 AAACTAACTTCTTCGA 243716 | || ||||||||||| Sbjct 8410 AGACCAACTTCTTCGA 8395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101856785502850