Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq71032 260 2e-64 seq71924 113 5e-20 >seq71032 Length=21228 Score = 260 bits (288), Expect = 2e-64 Identities = 921/1426 (65%), Gaps = 22/1426 (2%) Strand=Plus/Minus Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || |||| ||||| || ||| ||||| || ||| |||| | ||||| |||| Sbjct 15805 AGGTGCTCGTTGACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAG 15746 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| |||||||| || || || | ||| || | ||| ||||| |||||||| Sbjct 15745 GTGTAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATA 15686 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | ||| || ||| | |||||| | |||| | | | |||| Sbjct 15685 GGAGCGACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGGCACGCAAAGTGTCC 15626 Query 114074 CAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAG 114133 || || || | | | | | | ||| | || |||||| | || | ||| Sbjct 15625 CAATCCCAGCGGTCCGAGGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTGGAA 15566 Query 114134 GCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 114193 || || || ||||| | ||| ||| | ||| | ||| ||||| ||| || || Sbjct 15565 GCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGGCG 15506 Query 114194 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 114252 |||||| || ||||| || ||||| || ||| | || |||| | |||||| Sbjct 15505 GTGAGGGCAGCATGATAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGCGGGCCTCAGG 15447 Query 114253 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 114312 | || | | || || || || ||||| || ||||| || || || || | ||| Sbjct 15446 GCTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATGCC 15387 Query 114313 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATC 114372 || || | || | |||||| || || || || | |||||| ||| | || | || Sbjct 15386 GATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGATGTC 15327 Query 114373 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 114432 || ||| | || ||||| ||||| || ||||| | || || ||||| | || || Sbjct 15326 AATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGTGGTC 15267 Query 114433 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 114492 ||| ||||||| | | ||| | || |||||||| | || |||| || ||||| Sbjct 15266 AAATTCGCGAGTCGC---AGTGATGAATTTGGGAAGGGCAAGAGAGGCCAAGTTGCACAC 15210 Query 114493 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAAT 114552 || || || |||| ||| || | || || ||||| || || || || Sbjct 15209 AGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACTGGAT 15150 Query 114553 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGG 114612 |||||| | || || || || ||||| ||| || | |||||||| |||||||| || Sbjct 15149 GGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 15090 Query 114613 CGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG-GCGGCT----GGC 114667 || |||||||| | || |||| ||| |||| ||||| || | | || | | Sbjct 15089 AGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCACGAC 15030 Query 114668 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCTTC 114726 || |||| ||| || ||||||| |||||| ||| || |||| |||||| || Sbjct 15029 AC---GGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTT-AAACTCGTC 14976 Query 114727 ACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACC 114786 ||| | || | || || || |||| | ||||||||||| ||||| | ||| || Sbjct 14975 TCCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGCC 14916 Query 114787 CTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA-C 114845 || ||||||| |||||| ||||| || | ||| | | | |||||||||| ||| | Sbjct 14915 GTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAGC 14856 Query 114846 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 114905 | | || || || | || ||||| | ||| | || || | |||||| || | Sbjct 14855 ACGGTGC-TCCTCCTTACCGTGATTCTTCTTGAGCTCGAGGAATTCGAAGATATCGGCAT 14797 Query 114906 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 114962 |||| || || ||||| | || | | ||||| || || ||| | |||| || | Sbjct 14796 GCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGT 14737 Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022 | | || ||| | || ||||||||||||| ||||||| ||||| || ||| || | Sbjct 14736 AGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGG 14677 Query 115023 TCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTG 115082 | || || || ||| || |||| || || | | || |||||||| | Sbjct 14676 TGCCGCGGATGTAAGAGTTGGAAGCTCGGATGCGGTGTACAGCAAGGCCGATACCCCCAG 14617 Query 115083 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCAC 115142 | |||| ||||| | || |||| | ||||| || |||||||||| || || ||||| Sbjct 14616 CGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCTTCAATTGAGTCCT 14557 Query 115143 CCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGA 115202 | || | | | |||||||| || | || || | || || || || ||||||| Sbjct 14556 CTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATTGAAGA 14497 Query 115203 GGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGG 115262 |||| || || |||||| |||| | ||||| | |||||||| || | || | Sbjct 14496 GGGTAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAGGTTTCGATAACAG 14437 Query 115263 CGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 ||||||| | ||| ||||| || | | ||| ||||| | ||| Sbjct 14436 CGGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCAT 14391 >seq71924 Length=31871 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||||||| |||||| || || || ||| | ||||| Sbjct 8665 GCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGTCCG 8724 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||||| ||| || || | || || ||||||||||| || Sbjct 8725 GGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAAATG 8784 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||| || || || ||| |||||||||||| |||| Sbjct 8785 CCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGG 8824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596812912855880