Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq71032 298 5e-76 >seq71032 Length=21228 Score = 298 bits (330), Expect = 5e-76 Identities = 1185/1852 (64%), Gaps = 47/1852 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | || || ||||| ||| || || || ||||||| ||||||| | | | Sbjct 14316 TACTTCGGTTTTAAGACTCTCGAGCGTTCCTATCTTTTCAAGATCGATGGCAAGATCGTC 14375 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||| |||| || || |||||||||||||||| | || ||||| || | || || Sbjct 14376 GAGAGACCACAGCATATGCTGATGCGCGTCGCTGTTGGCCTTCACAAGGACAATATTCCC 14435 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAG-AGGTAT--ACCATGGCCACCCCG 93900 |||| | | | | ||| | | | || | | | ||| || ||||| Sbjct 14436 GCTGTTATCGAAACCTAC---GACCTTCTCTCCCAGCAACTCTTCACCCACGCTACCCCT 14492 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 ||||| ||||| || || || || || ||| | |||||||| ||||| | || | Sbjct 14493 ACCCTCTTCAATGCCGGCACTCCTCGCCCGCAGCTTTCTTCGTGCTTCCTCCTTACCATG 14552 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 || | ||||| || || || | ||||| |||||| | ||||| |||||| || Sbjct 14553 AAAGAGGACTCAATTGAAGGGATCTACGACACTCTCAAGCAGTGTGCCCTCATCTCTAAG 14612 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 | ||| ||||| ||||| | ||| ||| | | || || || ||||||||| Sbjct 14613 TCCGCTGGGGGTATCGGCCTTGCTGTACACCGCATCCGAGCTTCCAACTCTTACATCCGC 14672 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || ||||| |||||||| || || ||| | || ||||| || || | |||| || | || Sbjct 14673 GGCACCAACGGCACCTCGAATGGTCTCATTCCGATGCTTCGCGTATACAACGACACTGCT 14732 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| ||||| ||||| || | | | ||||| | || || |||| || |||||| Sbjct 14733 CGCTACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCCTTTGCCATCTACCTTGAGCCC 14792 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||||| || || | | ||| |||| || ||||| ||||| || || | | Sbjct 14793 TGGCATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAGAATCACGGTAAGGAGGAGCAC 14852 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT-CGA 94319 | || | || |||||||||| | | ||||| || |||||||| ||| | || || || Sbjct 14853 CGTGCTCGCGATCTCTTCTACGGTTTGTGGGTTCCCGACCTTTTCATGGAGCGTGTGCGT 14912 Query 94320 GAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTG 94379 | | | | |||| || || || ||||| || || || |||| ||| ||| Sbjct 14913 G-ACGGCGGTGACTGGTCGCTCTTCTGCCCCAACGAGGCCCCGGGTCTGTTCGATACTTG 14971 Query 94380 TGGA-TCGCGTTTTGAAG-ACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAG 94437 ||| || |||| ||| | |||| | || ||||| | |||| ||| | Sbjct 14972 GGGAGACGAGTTT--AAGCAGCTGTACGAGCGCTACGAGCAGGAGGGTCGCGCCCGCCGT 15029 Query 94438 GTTATGGATGCT-AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496 || || | ||| ||||| || ||| ||| | || ||| | |||||||| || Sbjct 15030 GTCGTGAAGGCTCAGGAA-CTCTGGTTCTCTATCCTCGAGTCTCAGATTGAGACGGGCAC 15088 Query 94497 GCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGT 94556 |||||||| | | ||||||||| |||| |||||| ||||||||||||||||| Sbjct 15089 TCCCTACATGCTCTACAAGGACTCCTGCAACCGCAAGTCTAACCAGCAGCACCTCGGCAC 15148 Query 94557 GATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGC 94616 ||| || || || ||||||| ||| | || ||| ||||| || ||||| | || Sbjct 15149 CATCCAGTCGTCCAACTTGTGCACAGAGGTGATCCAGTTCACTTCCCCCGACGAAGTGGC 15208 Query 94617 TGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTAC 94676 |||||| ||| ||| ||| | ||| ||| ||| | ||| | || Sbjct 15209 TGTGTGCAACTTGGCCTCTCTTGCCCTTCCCAAATTCAT------------CACTGCGAC 15256 Query 94677 TGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT---CTTGAACCT 94733 | || || | || ||| || || || || | | | || | ||| || Sbjct 15257 TCGCGAATTTGACCACAAGAAGC---TGCACGACGTGGTTAAGGTCGTAACCAAGAATCT 15313 Query 94734 GAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAA 94793 |||| ||| || |||| |||| |||||||| |||||||| || || || || Sbjct 15314 TAACAAGGTCATTGACATCAACTATTACCCCGTGCCGGAGGCCCGCAATTCGAATATGCG 15373 Query 94794 GCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCT 94853 || |||| |||||||| ||||| ||||| |||| |||| | || ||||||| | Sbjct 15374 TCACAGGCCGATCGGCATAGGCGTGCAGGGACTCGCCGACGTATTCATGCTGATGCGCTT 15433 Query 94854 GCCCTACGA---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTA 94910 || | || | ||| | | ||| | |||| ||| ||||| | ||| || Sbjct 15434 CCCTTGGGAGAGCCCTGAGG--CCCGCGAG-CTGAACCGCGCCATCTTCGAGACCATCTA 15490 Query 94911 TTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC-ACACGAAT 94969 | | | ||| | | ||| | | |||| || | || | ||| || ||| Sbjct 15491 TCATGCTGCCCTCACCGCCTCCTGCGAGATGGC--GAAGGAACAAGGCGCCTACTCGA-- 15546 Query 94970 CGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | | || || || ||| | ||||| | | ||| |||||| ||| || Sbjct 15547 CTTACGAGGGTTCTCCCGCTTCCA--AGGGCCTGCTCCAGCCCGACCTTTGGAACGTCGT 15604 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 ||||||| | | || ||||| || | || || || || |||||| | | Sbjct 15605 TCCCTCGGACCGCTGGGATTGGGACACTTTGCGTGCCGACATTGCTCGTCACGGTCTCAG 15664 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||||| || || || |||||||| ||||| || | |||||||| ||||| || Sbjct 15665 GAACTCGCTGCTCGTCGCTCCTATGCCCACTGCCTCGACCTCTCAGATCCTCGGCAATAA 15724 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| ||||| |||| |||||||||| | |||| | || | || || || || || Sbjct 15725 CGAGTGCTTCGAGCCCTACACCTCCAACATCTACACTCGCCGCATCCTTGCTGGTGACTT 15784 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAA 95267 ||||| ||||| ||||||| || || ||||| | | || ||||| | Sbjct 15785 TACCGTCGTCAACGAGCACCTGCTCCGTGACCTTCAGGAGCGCGGCCTGTGGTCCCCCGC 15844 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGA 95327 |||||||| | ||| | | |||||| || || ||| |||| | | ||||| || Sbjct 15845 CCTCAAGAACAAGCTGGTGGCCCACAACGGTTCGGTGCAGCGCATCGAGGAGATACCTGA 15904 Query 95328 GGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCA 95387 || ||||| ||| |||||||| ||||||||||| || ||||| || || ||||| Sbjct 15905 CGATCTCAAGAAGCTTTACAAGACAGTGTGGGAGATTCCTCAGCGTGTAGTAATCGACAT 15964 Query 95388 CGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGA 95447 || |||| ||| | | || ||| || |||| ||| Sbjct 15965 GGCTGCCGATCGCTCCGCTTATATTGACCAAAGTCAATCTCTCAACATTTACATGGGCGA 16024 Query 95448 GCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGAC 95507 ||| | || || | ||||||||| ||||||| |||| |||||||| ||||| Sbjct 16025 GCCTTCTTTCGCCAAGCTTACGTCCATGCACTTCTACGCCTGGAATAAGGGTCTGAAGAC 16084 Query 95508 CGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 || ||||| || |||||||| | || || || |||| |||||| || Sbjct 16085 TGGCATGTACTACCTGCGAACCCGACCCGCTGCCAACGCCATCCAGTTCACC 16136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494275407479560