Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq71761 91.5 1e-13 seq72113 89.7 5e-13 seq68691 89.7 5e-13 seq68586 84.2 2e-11 >seq71761 Length=19511 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || | ||| | |||||| || || || || ||||||||||| || || || ||| Sbjct 7951 TCCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGC 8010 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | || || | || || || ||| | || | || |||||||| || || Sbjct 8011 CAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGG 8070 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||||| || || || || || || || | || | || | |||||| ||||||| Sbjct 8071 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGA 8129 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||||| || ||||| || | ||||| || || || ||||| Sbjct 8130 CCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| ||||| || || ||| | || | || || Sbjct 8197 CACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGACCGTCCTC 8256 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | || |||||||| || ||||||||||| || || || Sbjct 8257 AAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTG 8316 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || || | || | || | |||||| |||||||| |||||||||| || | Sbjct 8317 GATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATGGTCT 8375 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || || ||||| ||||| Sbjct 8376 TGCCAGTGAGGGTCTTGACGAAAATCTGCAT 8406 >seq72113 Length=77669 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || || ||||||||||| || || || | Sbjct 40021 CCGCCGCGCAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCG 39962 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | || || || ||| | || | || |||||||| || ||| Sbjct 39961 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 39902 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| ||||| || Sbjct 39901 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCCAC 39843 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || ||||| |||||||| || || || || ||||| Sbjct 39842 CTCGAGAGTAATGGTCTTGCCCGTTAGAGTCTTGACGAAGATCTGCAT 39795 >seq68691 Length=2609 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||||||||| || || ||| || ||| | || || Sbjct 400 CACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTC 341 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | || | || |||||||| ||||| ||||| || || || || Sbjct 340 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 281 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||||| || | || | || | |||||| ||||| || |||||||||| || | Sbjct 280 GATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCT 222 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || || || || ||||| Sbjct 221 TGCCCGTAAGGGTCTTGACGAAGATCTGCAT 191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| || | | || || || || || || ||||||||||| || || || Sbjct 647 TTCCGCCGCGCAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 588 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || || || | ||| || || || | || | || |||||||| || | Sbjct 587 CGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGG 528 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||| || || || || || ||||| || | || | || | ||||||| ||||| Sbjct 527 GAATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCC 469 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || |||||||| || || || || || || ||||| Sbjct 468 ACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 419 >seq68586 Length=2644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| || | | || || || || || || ||||||||||| || || || Sbjct 683 TTCCACCGCGCAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 624 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || ||| | || || | || || || ||| | || | || |||||||| || | Sbjct 623 CGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCGGGGG 564 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||| || || || || || || || || | || | || | |||||| ||||| Sbjct 563 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCC 505 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || ||||| || | ||||| || || || ||||| Sbjct 504 ACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451594074953560