Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq71032 266 4e-66 seq71924 113 6e-20 >seq71032 Length=21228 Score = 266 bits (294), Expect = 4e-66 Identities = 920/1425 (65%), Gaps = 20/1425 (1%) Strand=Plus/Minus Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| ||||| || ||| ||||| || ||| |||| | |||||||||| Sbjct 15805 AGGTGCTCGTTGACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAG 15746 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||| || || || | ||| || | || ||||| |||||||| Sbjct 15745 GTGTAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATA 15686 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | ||| || ||| | |||||| | |||| | | | |||| Sbjct 15685 GGAGCGACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGGCACGCAAAGTGTCC 15626 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGAC 116094 || || || | | | | | | ||| | || |||||| | || | ||| Sbjct 15625 CAATCCCAGCGGTCCGAGGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTGGAA 15566 Query 116095 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 116154 || || || ||||| | ||| || | ||| | ||| ||||| ||| || || Sbjct 15565 GCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGGCG 15506 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 116213 |||||| || ||||| || ||||| || ||| | || |||| | |||||| Sbjct 15505 GTGAGGGCAGCATGATAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGCGGGCCTCAGG 15447 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | || | | || || || || ||||| || ||||| || || || || | ||| Sbjct 15446 GCTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATGCC 15387 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATC 116333 || || | || | |||||| || || || || | |||||| ||| | || | || Sbjct 15386 GATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGATGTC 15327 Query 116334 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 116393 || ||| | || ||||| ||||| || ||||| | || || ||||| | || || Sbjct 15326 AATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGTGGTC 15267 Query 116394 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 116453 ||| ||||||| | | ||| | || |||||||| | || |||| || ||||| Sbjct 15266 AAATTCGCGAGTCGC---AGTGATGAATTTGGGAAGGGCAAGAGAGGCCAAGTTGCACAC 15210 Query 116454 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAAT 116513 || || || |||| ||| || | || || ||||| || || || || Sbjct 15209 AGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACTGGAT 15150 Query 116514 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 |||||| | || || || || ||||| ||| || | |||||||||||||| || || Sbjct 15149 GGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 15090 Query 116574 CGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG-GCGGCT----GGC 116628 || |||||||| | || |||| ||| |||| ||| | || | | || | | Sbjct 15089 AGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCACGAC 15030 Query 116629 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCA 116688 || |||| ||| || ||||||| |||||| ||| || || |||||| || Sbjct 15029 AC---GGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTTAAACTCGTCT 14975 Query 116689 CCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCC 116748 ||| || || | || || || |||| | || |||||||| ||||| | ||| || Sbjct 14974 CCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGCCG 14915 Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CA 116807 || || |||| |||||| ||||| || | ||| | | |||||||||| ||| || Sbjct 14914 TCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAGCA 14855 Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867 | ||| || | | || ||||| | ||| | || || | |||||| || || Sbjct 14854 CGGTGCTCCTCCTTACCG-TGATTCTTCTTGAGCTCGAGGAATTCGAAGATATCGGCATG 14796 Query 116868 CCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATA 116924 ||| || || ||||| | || | | |||||||| || ||| | |||| || || Sbjct 14795 CCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGTA 14736 Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984 | || || |||| ||||||||||||| ||||||| ||||| || ||| || || Sbjct 14735 GCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGGT 14676 Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 117044 || || || ||| ||| |||| || ||| | | || |||||||| || Sbjct 14675 GCCGCGGATGTAAGAGTTGGAAGCTCGGATGCGGTGTACAGCAAGGCCGATACCCCCAGC 14616 Query 117045 CCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACC 117104 |||| ||||| | || |||| | ||||| || |||||||||| || || ||||| | Sbjct 14615 GGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCTTCAATTGAGTCCTC 14556 Query 117105 CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 || | | | ||||||||| || | || || | || || || || |||||||| Sbjct 14555 TTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATTGAAGAG 14496 Query 117165 GGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGA 117224 ||| || || |||||| |||| | ||||| | |||||||| || | |||| Sbjct 14495 GGTAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAGGTTTCGATAACAGC 14436 Query 117225 GGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 |||||| | ||| ||||| || | | ||| ||||| | ||| Sbjct 14435 GGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCAT 14391 >seq71924 Length=31871 Score = 113 bits (124), Expect = 6e-20 Identities = 307/460 (67%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| || || || || |||||||||||| ||||| || ||||| |||| Sbjct 8370 CTTGGCGTACTCGCCAACACGACGCTCGAAGAAGTTGGTCTTGCCCTCGAGCGAGATAAG 8429 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGA 127343 |||||| | || ||||| | || |||| || ||| |||| || Sbjct 8430 CTCCATCCAGGGGAAGGGGTTGGTCTTGTGG-AAATGCTTCTCACAGCCAAGAGCCACGA 8488 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 ||||||| || | |||| | || ||||||| |||| ||| | |||||| ||||||| Sbjct 8489 GGAGACGGTCGGCGACGAATTCGATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGA 8548 Query 127404 G-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | || ||||| | || || |||| ||||||| || || ||||| || | | | Sbjct 8549 GAGCCACG-GGGAGAGACTCGGTGACGAACTCCTTCTCTATCTCGACAGCCTCGAGAATG 8607 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAG-TCTTGAAGAGTTCCACA 127519 || | | | | || | ||| | ||| | | | | | || ||| || | Sbjct 8608 ATCGTCTTAGGAACCTCGGGCGAGGGTTTGTTGACGAGCATGCTATAGAGGAGA--CA-A 8664 Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||||||| |||||| || || || ||| | || || Sbjct 8665 GCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGTCCG 8724 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||||| ||| || || | || || ||| |||||||| || Sbjct 8725 GGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAAATG 8784 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || || || ||| |||||||| || |||| Sbjct 8785 CCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGG 8824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612951891626760