Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq71032 156 7e-33 seq71924 143 4e-29 >seq71032 Length=21228 Score = 156 bits (172), Expect = 7e-33 Identities = 337/497 (68%), Gaps = 8/497 (2%) Strand=Plus/Minus Query 203837 GTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 |||| ||| || |||||||| |||||||| | || || | | ||| ||| ||||||||| Sbjct 16147 GTCTGGTCGACGGTGAACTGGATGGCGTTGGCAGCGGGTCGGGTTCGCAGGTAGTACATG 16088 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||||| | ||| |||| | ||||||||| | || ||| | Sbjct 16087 CCAGTCTTCAGACCCTTATTCCAGGCGTAGAAGTGCATGGACGTAAGCTTGGCGAAAGAA 16028 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || ||| |||||| |||||| ||||| || |||||||| || ||| | ||||| || Sbjct 16027 GGCTCGCCCATGTAAATGTTGAGAGATTGACTTTGGTCAATATAAGCGGAGCGATCGGCA 15968 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075 ||||| | ||| | ||| | |||||||||||| |||||| || | ||| || Sbjct 15967 GCCATGTCGATTACTACACGCTGAGGAATCTCCCACACTGTCTTGTAAAGCTTCT-TGAG 15909 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | ||| | || | | | | ||| | ||| ||||||| ||||| ||| | || Sbjct 15908 ATCGTCAGGTATCTCCT-CGATGCGCTGCACCGAACCGTTGTGGGCCACCAGCTTGTTCT 15850 Query 204135 TCGTCTCCTCCCCCCACATGC--CCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||||| || | ||||| || || || | |||||| ||||| Sbjct 15849 TGAGGGCGGGGGACCACAGGCCGCGCTCCTGA--AGGTCACGGAGCAGGTGCTCGTTGAC 15792 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || |||||| || | || | | || ||| | | |||| |||| | || ||||| Sbjct 15791 GACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAGGTGTAGGGCTCGAA 15732 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||| ||||||| ||||||| ||| ||| |||||||| ||||| | |||||| Sbjct 15731 GCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATAGGAGCGACGAGCAG 15672 Query 204313 GGAGTTGCGCACACCGT 204329 ||||| | | ||||| Sbjct 15671 CGAGTTCCTGAGACCGT 15655 >seq71924 Length=31871 Score = 143 bits (158), Expect = 4e-29 Identities = 538/837 (64%), Gaps = 19/837 (2%) Strand=Plus/Plus Query 159652 CTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTT 159711 |||||| ||||||||||||||||| | || || ||||| | ||| ||||| | Sbjct 8394 CTCGAAGAAGTTGGTCTTGCCCTCGAGCGAGATAAGCTCCATCCAGGGGAAGGGGTTGGT 8453 Query 159712 CACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGAT 159771 | ||| | ||||| | | || |||||| | || | | ||| || || |||||||| Sbjct 8454 CTTGTGGAAATGCTTCTCACAGCCAAGAGCCACGAGGAGACGGTCGGCGACGAATTCGAT 8513 Query 159772 GTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAG 159831 ||| ||||| |||| ||| || || | || |||||||| | || | | Sbjct 8514 GTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGAGCCACGGGGAGAGACTCGGTGAC 8573 Query 159832 AAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AGACACGTTCGTACCCCG 159890 ||||||||||| |||||||| || ||| | ||| | || || | || | | Sbjct 8574 GAACTCCTTCTCTATCTCGACAGCCTCGAGAATGATCGTCTTAGGAACCT-CGGGCGAGG 8632 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||| | | ||| || | ||||| || |||||||||||||| || |||| Sbjct 8633 GTTTGTTGACGAGCATGC------TATAGAGGAGACAAGCAAAGTCGCAGTGAAGACCCT 8686 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| ||||||||| | | ||| || ||||||| || ||| || | Sbjct 8687 CGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGTCCGGGCATGAGGCCTCGCTTCTTCA 8746 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 ||||||| |||| ||| |||| | | | || || || ||||| ||||| ||||| | Sbjct 8747 GCCAAAAGATGG-AGCAGAAGCTGCCCGAGAAGAAAATGCCCTCTACGGCAGCAAAACCA 8805 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT---GGGTCCACCTTTTGGCCCATTCA 160123 | ||| | |||| | || | | | | || | | ||||| | | ||||| || Sbjct 8806 ATGAGACGCTCAGCGAAGGTCTCCTGGCCCTCCTTGCCGATCCACTTGATAGCCCACTCG 8865 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||||||| || | |||| |||| |||| || | | |||| ||| | Sbjct 8866 GCCTTCTTTTTGACTGAAGGCACAGTTTCGATGGCGCGGAAGAGGCGATCCTTCTCGATA 8925 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 ||||||| || | || || || ||||| || | ||| | ||||| ||| Sbjct 8926 GGGTCCTTGACGTAGGTGTCGATAAGAAGGGAATACATCTCCGAGTGAATGTTTTCAATG 8985 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTT 160303 || || || || ||||| | |||||| || ||||| |||| |||| | Sbjct 8986 GCGATTTGGAATCCATAGAAGCAACGCGCCTCGGGAACTTGCACTTCCTTCATGAAGCGA 9045 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | | ||||| || ||| | ||||| ||||| ||||| |||| |||||| Sbjct 9046 ACAGCGAGATTCTCAGCAACAATACCGTCACTAGCCGCGAAGAAGGCCAGCACGTGCTTA 9105 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || ||||||| || |||| | ||||||| ||| ||| | | | | Sbjct 9106 ATGAAGTGCTTCTCGTCCTTAGTGAG---CGAGGCCCAGTGATTCAAGTCGCTGCCTAGA 9162 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 || || ||||| || |||| || ||||| ||| | ||||| | |||||||| Sbjct 9163 TCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794435475210160