Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq72197 403 2e-107 seq71226 214 2e-50 >seq72197 Length=52184 Score = 403 bits (446), Expect = 2e-107 Identities = 1075/1634 (66%), Gaps = 19/1634 (1%) Strand=Plus/Minus Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582 |||||| ||||| | ||||| ||||||||||| | | | || || || || | || Sbjct 33017 GTAGTTCTCGAGCGCGTTCTTGGCCTCGACCTTCTCCTTGGCCTGCTCGTCGTCGTTCTT 32958 Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||||| || || || | |||||| || || || || || || | | ||||| || Sbjct 32957 GTACTTCTCGGCCTCCTTGACCATGCGCTCGATCTCCTCCTTAGAGAGACGGCCCTTGTC 32898 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 || || || || ||||| ||||| ||| | || ||| || | || | || || | Sbjct 32897 GTTGGTGATGGTGATCTTCTCGGAACGACCGGTGGTCTTGTCGGCGGCGTTGACGTTGAG 32838 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||||| || || |||| ||||| | || | || || || ||| | || |||| Sbjct 32837 GATACCGTTGGCGTCAATGTCGAAGGTGACCTCGATCTGAGGCACACCGCGGGGAGCGGG 32778 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || || || || | || || | || || | |||| ||| | | | | ||| || Sbjct 32777 GGGGATGCCAGTGAGCTCGAACTTGCCGAGCATGTTGTTGTCCCTGGTCATGGCACGCTC 32718 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 || || ||||| | || ||| |||| || || || || ||||||| || Sbjct 32717 GCCCTCGTAGACCTGGATGAGCACGCCAGGCTGGTTGTCCGAGTAGGTGGAGAAGACCTG 32658 Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCAT 6942 ||||| | || || || || || || || || | | ||||| | ||||| Sbjct 32657 GGTCTTCTTGGTGGGGATGGTGGTGTTCCTGGGGATGAGGGCAGTCATCACGCCACCGGC 32598 Query 6943 AGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTT---GAACAGA 6999 || |||| || || | || || || ||||| | ||| | || ||| | || || Sbjct 32597 GGTCTCGATACCGAGGGTGAGGGGAGTGACGTCAATGAGGAGCACGTCACCGAGGACGGA 32538 Query 7000 TTCGT---TCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 | | | |||| | | ||| ||||| ||||| | || ||||| ||||| || Sbjct 32537 GCCCTGGGTGGAGGCACCGCTGAGGATAGCGGCCTGGACGGCAGCACCGTAAGCGACGGC 32478 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC-ATTT 7115 |||||||||||| |||| || | || || ||||| || | | | |||| | | Sbjct 32477 CTCATCGGGGTTGATCGACTTGCAGGGCTCCTTGCCGTTGAAGAACTGGG-TAACGAGCT 32419 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT- 7174 | || || || ||||| || || || |||||||| | |||| || |||| ||| Sbjct 32418 GCTGGATCTTGGGGATACGGGTGGAACCACCGACGAGCACGACCTCGCTCAC---CGAGC 32362 Query 7175 --TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACA 7232 || || ||||| | ||| || || || ||||| || ||||| |||||| | Sbjct 32361 GCTTGTCCATCTTGGCGTCGCGGAGGACCTTCTCGACGGGGTCCATGGTCGAACGGAAAA 32302 Query 7233 AGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGT 7292 || || || ||||| ||||| |||||||| || || || |||||||| | || | Sbjct 32301 GATCGGCGCAGAGCTCCTCGAAACGGGCACGGGTGATCGAGGTGTAGAAATCGATACCCT 32242 Query 7293 CGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGC 7352 || | | || || || |||||| | || || | | || || || | ||||| || | Sbjct 32241 CGAAGAGAGAGTCGATCTCAATGTTGGTCTGAGTGGCGGACGACAAAGCGCGCTTGGCCC 32182 Query 7353 GCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTAT 7412 ||| || || || || | |||||| | |||||| | ||| ||||| || || || || | Sbjct 32181 TCTCGCAAGCAGTGCGGAGACGACGGACGGCACGAGCGTTGCCGGAGATGTCCTTGTTGT 32122 Query 7413 GTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 | || || || ||||| | |||||| | | | ||||| || ||||| | Sbjct 32121 GCTTGCGCTTGAACTCCTGGATGAAGTGGTTCACCATGCGGTTGTCGAAGTCCTCACCGC 32062 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 ||||||| || || || ||||| || ||||| || || || || | || || | | | Sbjct 32061 CCAAGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAAATGCCCTCCTCGATAGTGAGGA 32002 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 ||| || || || ||||| || || || || || ||||| |||||| | || | | Sbjct 32001 GCGAGACGTCGAAAGTACCGCCGCCAAGATCGAAGATGAGCACGTTCATCTCACCCTGGG 31942 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GA 7651 ||||| ||||||||||| || ||||| || || || || || || || || || || Sbjct 31941 ACTTCTTGTCGAGACCGTAGGCAATAGCGGCGGCGGTGGGCTCGTTGATGATTCGCTTGA 31882 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 | | || || | || || | || || ||||| || || | ||||| ||||| ||| Sbjct 31881 CC-TGCATACCGGAGATGGTACCAGCGTCCTTCGTGGCCTGCCTCTGCGAGTCGTTGAAG 31823 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || |||||||| | ||| || ||| || ||||| || | || ||| | Sbjct 31822 TACGCGGGGACCGTAATGACGGCCGAGTTGATGGGCTGGCCGAGGTAGGCCTCTGCGGTC 31763 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCA 7831 || ||||| ||| || |||||||| || || || |||| | |||| || || || Sbjct 31762 TCCTTCATCTTGACGAGCACCATCGAAGAGATTTCCTCAGGAGAGAACTCCTTGGTCTCG 31703 Query 7832 CCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGAC 7891 || || | ||||| | || ||| || || | | |||| ||||| | | | Sbjct 31702 CCCTTGTACTCAACCTGGATGTAGGGCTTGTCGCCGGGCTTCTGGATGACCTTGAAGGGC 31643 Query 7892 CAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTT 7951 || | ||||| || | || || |||| || | || | ||||| |||||||| Sbjct 31642 CAGTGCTTCATGTCAGCCTGCACGACGGGGTCGGAGTAGTTACGACCGATGAGACGCTTG 31583 Query 7952 GCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATA 8011 ||||| || || ||||| | ||||||||||| ||||||||| || || || ||||| Sbjct 31582 GCATCGAAGACAGTGTTGTGCGGGTTCATGGCCACTTGGTTCTTGGCGGCATCTCCGATG 31523 Query 8012 AGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCG 8071 ||||| ||| | | | || || ||||||||||| |||||| ||||| || |||||| Sbjct 31522 AGACGCTCAGTGT---CGGTGAAGGCGACGTACGACGGGGTCACGCGATTACCCTGGTCG 31466 Query 8072 TTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCT 8131 || || ||||| || || || ||||| |||||||| ||||||||||| || || || || Sbjct 31465 TTGGCGATAATCTCCACTCGATCGTTCTGCCAGACACCGACGCACGAGTATGTGGTGCCG 31406 Query 8132 AAATCAATACCGAT 8145 | ||| |||||||| Sbjct 31405 AGATCGATACCGAT 31392 >seq71226 Length=68202 Score = 214 bits (236), Expect = 2e-50 Identities = 417/613 (68%), Gaps = 11/613 (2%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| |||||||| ||||||||||||| || || | ||| | |||| | || | | | Sbjct 59400 CGACACATCAAAAGTACCACCACCCAAATCGAAGACGAGGATGTTCTTCTCACCCT---T 59344 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || | ||| ||||||||||| || || || || || || || |||||||| | | Sbjct 59343 AACCTCGTTGAGGCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATAATACGGACAAC 59284 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| || || ||||| | ||||| || || || || || || | ||||| ||||| Sbjct 59283 GTTGAGACCGGCAATGACACCGGCATCCTTGGTGGCCTGACGCTGGGCGTCGTTGAAGTA 59224 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 |||||| || || || || |||| | |||| |||| || || || | || ||||| || Sbjct 59223 GGCCGGAACAGTGACTACGGCGTTCTTGACGGTCTTGCCAAGGTAAGCCTCGGCGATCTC 59164 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||||| ||||| |||||||| | |||||||| |||| || || | || | |||||| Sbjct 59163 CTTCATCTTGGTGAGAACCATGGCGGAAATCTCCTCAGGAGCGAATTCCTTGGATTCACC 59104 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACC 7892 || || | ||| | || ||| || || | | | | | | ||| || | | Sbjct 59103 CTTGAAGTTAACGTTGATGTAGGGCTT----GCCGTTCTTGTTGGTGATCTTGTAAGGCA 59048 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTG 7952 | || || | || || | || ||| ||| || | ||||| |||||||| Sbjct 59047 GAAGCTTGGCGTCAGCCTGAACTTCTTTGTCACCAAAGTTGCGACCGATGAGACGCTTGA 58988 Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 | || || || ||||| | |||||| | || | || ||||| || ||||| ||||| | Sbjct 58987 CGTCGAAGACAGTGTTCTCGGGGTTAAGAGCGGCCTGATTCTTAGCGGCGTCTCCGATGA 58928 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072 |||| || | || || || || || ||||| || || | || || || ||||||| Sbjct 58927 GACGCTC---GCTCTCAGTGAAGGCCACATACGAGGGAGTGATACGGTTGCCCTGGTCGT 58871 Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTA 8132 | || || || || |||||| |||| | ||||| ||||||| ||||| || || || | Sbjct 58870 TGGCGATGATGTCCACGCGGCCGTTCTTCCAGATGCCGACGACAGAATAGGTGGTACCAA 58811 Query 8133 AATCAATACCGAT 8145 ||| |||||||| Sbjct 58810 GATCGATACCGAT 58798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634557917485240