Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq71032 221 1e-52 seq71924 129 7e-25 >seq71032 Length=21228 Score = 221 bits (244), Expect = 1e-52 Identities = 689/1055 (65%), Gaps = 24/1055 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||| | ||||| ||||| | || | || ||| ||||| ||||| Sbjct 14382 CCACAGCATATGCTGATGCGCGTCGCTGTTGGCCTTCACAAGGACAATATTCCCGCTGTT 14441 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || |||||| | |||| | |||| |||||| || || ||||||||| Sbjct 14442 ATCGAAACCTACGACCTTCTCTCCCAGCAACTCTTCACCCACGCTACCCCTACCCTCTTC 14501 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || || || || | || || | || || ||||| || | | || ||||| Sbjct 14502 AATGCCGGCACTCCTCGCCCGCAGCTTTCTTCGTGCTTCCTCCTTACCATGAAAGAGGAC 14561 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||||| | || || |||| |||||||| | ||||||| ||||| |||| ||||| Sbjct 14562 TCAATTGAAGGGATCTACGACACTCTCAAGCAGTGTGCCCTCATCTCTAAGTCCGCTGGG 14621 Query 111852 GGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 |||||||| | || ||| | ||| | |||| ||| ||| || | || | Sbjct 14622 GGTATCGGCCTTGCTGTACACCGCAT-----CCGAGCTTCCAACTCTTACATCCGCGGCA 14676 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || ||||| | ||||| ||||||||||||| |||| ||| || |||| Sbjct 14677 CCAACGGCACCTCGAATGGTCTCATTCCGATGCTTCGCGTATACAACGACACTGCTCGCT 14736 Query 111967 ATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | || |||||| ||| || ||||||||| | | || |||| |||||||| |||| Sbjct 14737 ACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCCTTTGCCATCTACCTTGAGCCCTGGC 14796 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 | || |||||| | || ||||| ||| | || || ||| | |||||| | | || Sbjct 14797 ATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAGAATCACGGTAAGGAGGAG-CACCGT 14855 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || ||||||||||||| || | | ||| |||| || || |||||| || | || || Sbjct 14856 GCTCGCGATCTCTTCTACGGTTTGTGGGTTCCCGACCTTTTCATGGAGCGTGTGCGTGAC 14915 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||||| ||||| || || || |||| || ||||| | |||| | ||| Sbjct 14916 GGCGGTGACTGGTCGCTCTTCTGCCCCAACGAGGCCCCGGGTCTGTTCGATACTTGGGGA 14975 Query 112203 GAGGAGTTTGAAGC-CCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGG 112260 || |||||| |||| || ||| |||||| | || |||| | | | | | | | Sbjct 14976 GACGAGTTT-AAGCAGCTGTACGAGCGCTACGAGCAGGAGGGTCGCGCCCGCCGTGTC-G 15033 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 || ||| || | ||| |||| ||| ||||||| | ||||| || || || | Sbjct 15034 TGAAGGCTCAGGAACTCTGGTTCTCTATCCTCGAGTCTCAGATTGAGACGGGCACTCCCT 15093 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 | ||||| ||||| ||| |||| |||| ||| ||| || || | | || ||| Sbjct 15094 ACATGCTCTACAAGGACTCCTGCAACCGCAAGTCTAACCAGCAGCACCTCGGCACCATCC 15153 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||| | || ||||| | | | || || | || || |||||||| Sbjct 15154 AGTCGTCCAACTTGTGCACAGAGGTGATCCAGTTCACTTCCCCCGACGAAGTGGCTGTGT 15213 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC-CAGAGACAAAGACATTTGAT 112499 | ||| | || || | || || ||||| | ||| | | ||| |||||| Sbjct 15214 GCAACTTGGCCTCTCTTGCCCTTCCCAA----ATTCATCACTGCGACTCGCGAATTTGAC 15269 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | || || ||||| || || || || || || || |||| || ||||| Sbjct 15270 CACAAGAAGCTGCACGACGTGGTTAAGGTCGTAACCAAGAATCTTAACAAGGTCATTGAC 15329 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||||||| | || || || || |||||| | ||| | || || || Sbjct 15330 ATCAACTATTACCCCGTGCCGGAGGCCCGCAATTCGAATATGCGTCACAGGCCGATCGGC 15389 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 | || || || || ||||| || |||||||| || Sbjct 15390 ATAGGCGTGCAGGGACTCGCCGACGTATTCATGCT 15424 >seq71924 Length=31871 Score = 129 bits (142), Expect = 7e-25 Identities = 183/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| |||||| |||| || || | | ||||||| || || Sbjct 8921 GAGAAGGATCGCCTCTTCCGCGCCATCGAAACTGTGCCTTCAGTCAAAAAGAAGGCCGAG 8862 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT---CCTTTGCTGAGCGACTCTTCGCA 102194 |||||||| |||||| | | | || | |||| |||||||| ||| | | Sbjct 8861 TGGGCTATCAAGTGGATCGGCAAGGAGGGCCAGGAGACCTTCGCTGAGCGTCTCATTGGT 8802 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 ||||| || ||||| || |||||||| || ||||||| | || | |||||| ||| Sbjct 8801 TTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCTCCATCTTTTGGCTGAAG 8742 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 |||||||| |||||||| || |||| ||| ||||||||||| ||| ||||||||||| Sbjct 8741 AAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGT 8682 Query 102315 CTCCACCAAGAGTTTGC 102331 || ||| || ||||| Sbjct 8681 CTTCACTGCGACTTTGC 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620180542775920