Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq71032 208 9e-49 seq71924 111 2e-19 >seq71032 Length=21228 Score = 208 bits (230), Expect = 9e-49 Identities = 1040/1636 (64%), Gaps = 34/1636 (2%) Strand=Plus/Minus Query 109534 CGATCAGCCGCCATGTCGATGA-TACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||||| || ||||||||||| | ||||| | | ||| ||||| || |||||||| | Sbjct 15976 CGATCGGCAGCCATGTCGATTACTACACGCTGAGG-AATCTCCCACACTGTCTTGTAAAG 15918 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCA---GCCTTCAC 109649 ||||||| ||| || || || ||| ||||| || | || || ||| || Sbjct 15917 CTTCTTGAGATCGTCAGGTATCTCCTCGATGCGCTGCACCGAACCGTTGTGGGCCACCAG 15858 Query 109650 CATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATG 109709 | || | ||| | | ||||| || ||| || | || || | || || Sbjct 15857 CTTG---TTCTTGAGGGCGGGGGACCACAGGCCGCGCTCCTGAAGGTCACGGAGCAGGTG 15801 Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 || |||||| ||| ||| ||||||||||| |||| || ||||||||| | ||||| Sbjct 15800 CTCGTTGACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAGGTGTA 15741 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 ||| ||||| ||||| || ||||| ||||| || | || || || |||||||| ||||| Sbjct 15740 GGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATAGGAGC 15681 Query 109830 CATGAGAAGACTGTTTCGGAGACCCT-TCG-TCTTTACCCGCTCACGCATTGCGTCCCAA 109887 | ||| || ||| | |||||| | || | | | | |||||| | ||||||| Sbjct 15680 GACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGG--CACGCAAAGTGTCCCAA 15623 Query 109888 TCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCA 109947 || | || | | | | | | | ||| | || || || || | |||| Sbjct 15622 TCCCAGCGGTC-CGA-----GGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTG 15569 Query 109948 GCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAA 110007 | ||| |||||||||| | || || ||| | || | ||| |||| |||| | || Sbjct 15568 GAAGCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAG 15509 Query 110008 GCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGC-ATTCATGAGGCGAGACTC 110066 || || || |||||||| || ||||| || || | || |||| ||| | ||| Sbjct 15508 GCGGTGAGGGCAGCATGATAGATGGTCTCGAAGAT-GGCGCGGTTCAGCTCGCGGGCCTC 15450 Query 110067 TTCACAGT-CGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGA 110125 | | | |||||||| || || || || || || || || ||||| || || | Sbjct 15449 AGGGCTCTCCCAAGGGAAGCGCA-TCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTA 15391 Query 110126 GACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGC 110185 || || || | || ||| || || || || ||||||||| ||||| Sbjct 15390 TGCCGATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGA 15331 Query 110186 GGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGT 110245 ||| |||||| || |||||||| || || ||| | || || || || | || Sbjct 15330 TGTCAATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGT 15271 Query 110246 AATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 || || || || | | | ||| ||||||| || |||| ||| || | |||| Sbjct 15270 GGTCAAA--TTCGCGAGT-CGCAGTGATGAATTTGGGAAGGGCAAGAGAGGCCAAGTTGC 15214 Query 110306 ACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCT 110365 |||||| ||||| | ||| | | | | || || ||||||||||| || Sbjct 15213 ACACAGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACT 15154 Query 110366 TAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGT 110425 ||| || | || || ||| || || ||| |||||| | ||||| |||||||||| Sbjct 15153 GGATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGT 15094 Query 110426 ATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA---TACATCGGCGGCGG 110482 | || || || || || |||| |||| ||| || | ||| | | | || Sbjct 15093 AGGGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCA 15034 Query 110483 GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 |||| ||| ||| |||| |||| |||||| ||||| | || ||| || | Sbjct 15033 CGACA-CGGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTTAAACTCGT 14977 Query 110543 GTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCAC 110602 ||| | ||| | |||||| |||| || ||| |||||||| ||||| | || | Sbjct 14976 CTCCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGC 14917 Query 110603 CCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGC 110662 | || || | || |||||| ||||| |||| ||||| | |||| || || || Sbjct 14916 CGTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAG 14857 Query 110663 AACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGT 110722 ||| ||| || | ||| || || ||||| | || || | |||||| | | Sbjct 14856 CACGGTGCTCCTCCTTACCGTGATTCTTCTTGAGCTCGAGGAATTCGAAGATATCGGCAT 14797 Query 110723 GCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACAT 110779 |||| || || || |||| || | || |||||| || || || | |||| ||| | Sbjct 14796 GCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGT 14737 Query 110780 AGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTG 110839 |||| || ||| | ||| | || | ||||| ||||| | |||| || || || | Sbjct 14736 AGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGG 14677 Query 110840 TACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCG 110899 | || | || || || || || ||| ||| | | | || ||||| || | Sbjct 14676 TGCCGCGGATGTAAGAGTTGGAAGCTCGGATGCGGTGTACAGCAAGGCCGATACCCCCAG 14617 Query 110900 CCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTG 110959 | ||||| || | ||||||| |||| || | || || || ||||| || || Sbjct 14616 CGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCTTCAATTGAGTCCT 14557 Query 110960 CCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGA 111019 | || ||| || || ||||| ||||| | ||| || ||||| || || |||||||||| Sbjct 14556 CTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATTGAAGA 14497 Query 111020 GTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG 111079 | ||||| || || || |||| || ||||| | || ||| || |||| | | Sbjct 14496 GGGTAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAGGTTTCGATAACAG 14437 Query 111080 AGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTT 111139 ||| | || | ||||| |||| || || ||||| | ||||| || || | | Sbjct 14436 CGGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCATATGCTGTGGTCTCT 14377 Query 111140 CGATTAGCTTTCCATC 111155 ||| | ||| ||||| Sbjct 14376 CGACGATCTTGCCATC 14361 >seq71924 Length=31871 Score = 111 bits (122), Expect = 2e-19 Identities = 281/422 (67%), Gaps = 24/422 (6%) Strand=Plus/Plus Query 119319 AGAAGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATG 119378 || ||||| |||| ||| | ||||| || | | |||| || | ||||| || ||| Sbjct 8488 AGGAGACGGTCGGCGACGAATTCGATGTACTGGCACATGAGCTCGGCGTTCATGCCGATG 8547 Query 119379 AGATTACACGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCAC 119437 ||| |||||| |||| ||| || ||| | |||||| ||||| ||||| || | Sbjct 8548 AGAGC-CACGGGGAGAGACTCGGTGACGAACTCCTTCTCTATCTCGACAGCCTCGAGAAT 8606 Query 119438 GATGGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAG-----TTTAAACAACTCT 119492 ||| | | | | || | ||| |||||||| | ||| | || | | | Sbjct 8607 GATCGTCTTAGGAACCTCGGGCGAGGGTTTGTTG---ACGAGCATGCTATAGAGGAGACA 8663 Query 119493 ACGGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT 119552 | ||||| || ||||| || || || || ||||||||| || ||| | ||| Sbjct 8664 A--GCAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGT 8721 Query 119553 CCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAG 119612 || |||||||| |||| ||||| ||||||||||||| || || || || || ||||| Sbjct 8722 CCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAA 8781 Query 119613 ATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTG 119666 |||||||| || || ||| | | ||||||||||| || | | | |||| Sbjct 8782 ATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTCCTTG 8841 Query 119667 TCGAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATG---CAGGGGACAGTTTGGATG 119723 ||| |||||||| |||||| | |||||| || | || | || ||||||| |||| Sbjct 8842 CCGATCCACTTGATAGCCCACTCGGCCTT---CTTTTTGACTGAAGGCACAGTTTCGATG 8898 Query 119724 GC 119725 || Sbjct 8899 GC 8900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588442895735800