Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq71032 298 6e-76 >seq71032 Length=21228 Score = 298 bits (330), Expect = 6e-76 Identities = 843/1276 (66%), Gaps = 33/1276 (3%) Strand=Plus/Minus Query 106117 CCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC 106176 ||||||| | | |||||||||||| | ||| |||| ||||| | | |||| || Sbjct 15574 CCCTTGGAA-GCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTC 15516 Query 106177 ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA-TTCATCTCCT 106235 ||| || |||| || ||||| ||||| || ||||| | || |||| ||| Sbjct 15515 GCAGGAGGCGGTGAGGGCAGCATGATAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGC 15457 Query 106236 TGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAA 106295 ||| ||| || | | | |||| || || ||||| || ||||| || || | Sbjct 15456 GGGCCTCAGGGCTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCA 15397 Query 106296 CACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAA 106355 | || | || || || ||||| |||||||| || || || || | ||||| ||| Sbjct 15396 CGCCTATGCCGATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAAT 15337 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 | || |||||||||| ||| ||||| ||||| || | ||| | || || || | Sbjct 15336 AGTTGATGTCAATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCT 15277 Query 106416 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 106475 | | | ||||| ||||||| | | ||| | || |||||||| | || |||| Sbjct 15276 TCTTGTGGTCAAATTCGCGAGTCGC---AGTGATGAATTTGGGAAGGGCAAGAGAGGCCA 15220 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 | ||||| |||||| || || ||| ||| | | ||||| |||||||||| Sbjct 15219 AGTTGCACACAGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGG 15160 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | || || || || | | || |||||| ||| |||||| | |||||||||| Sbjct 15159 ACGACTGGATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGA 15100 Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGG 106655 |||||||||| || |||||||| |||| |||| ||| || | ||| | || | Sbjct 15099 GCATGTAGGGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAG 15040 Query 106656 CTGGTAC--AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAA 106712 | || | |||| ||| || |||||| |||||| ||| || |||| || Sbjct 15039 CCTTCACGACACGGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTT-AA 14983 Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 106772 |||| || ||| | ||| | ||||| || |||| || || ||||| || ||||| | Sbjct 14982 ACTCGTCTCCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGT 14923 Query 106773 GACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 106832 ||| || || || |||| |||||||||||| |||| ||||| | ||||||| Sbjct 14922 CACCGCCGTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGAT 14863 Query 106833 CTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGAT 106890 | | | ||| | | ||| || | ||| || || || | | ||| ||||| || | ||| Sbjct 14862 CGCGAGCACGGTG-CTCCTCCTTACCGTGATT-CTTCTTGAGCTCGAGGAATTCGAAGAT 14805 Query 106891 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTG 106947 ||| || ||||| |||||||| |||| || | | |||||| || || ||| |||| Sbjct 14804 ATCGGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTG 14745 Query 106948 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 107007 | || ||||| || ||| |||| ||||||||||||| ||||| | ||||| || Sbjct 14744 GTCAACGTAGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGT 14685 Query 107008 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG-GATGTGCATC---- 107062 || || || || || || ||| || |||| ||| | ||| || | Sbjct 14684 GCCGTTGGTGCCGCGGATGTAAGAGTTGGAAGCTC-----GGATGCGGTGTACAGCAAGG 14630 Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || ||||||||||| |||| ||||| | ||||||| | | ||||| | ||||| || Sbjct 14629 CCGATACCCCCAGCGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCT 14570 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||||||||||| || ||| | |||||||| || | |||||| | || || Sbjct 14569 TCAATTGAGTCCTCTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTG 14510 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || |||||||||||||| || || ||||| |||| | ||||| | |||||| Sbjct 14509 CCGGCATTGAAGAGGGTAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAG 14450 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 || || | |||| ||| | ||| ||| | ||| | || || ||||| | ||| Sbjct 14449 GTTTCGATAACAGCGGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCATA 14390 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG--AAGATAGCTCTTCTCAAGGG 107360 | || ||| | || | || ||||||||| | ||| ||||||| ||| || | Sbjct 14389 TGCTGTGGTCTCTCGACGATCTTGCCATCGATC--TTGAAAAGATAGGAACGCTCGAGAG 14332 Query 107361 TTTTGAGACCAAAGTA 107376 | || | ||| ||||| Sbjct 14331 TCTTAAAACCGAAGTA 14316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589446786253640