Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq68691 113 3e-20 seq72197 109 4e-19 seq72113 107 1e-18 seq68586 107 1e-18 seq71540 105 4e-18 seq71072 102 5e-17 seq72303 98.7 6e-16 seq71838 93.3 3e-14 seq21823 93.3 3e-14 seq71761 89.7 3e-13 >seq68691 Length=2609 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | || | || |||||||| || |||||||| Sbjct 381 TCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAG 322 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || ||| Sbjct 321 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTC 262 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || ||||| || ||||| || Sbjct 261 TCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACG 202 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 201 AAGATCTGCATA 190 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | || | || | || || || || || |||||||| Sbjct 609 TCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAG 550 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || || ||| Sbjct 549 ATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTC 490 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || |||| ||| || || || || ||||| ||||| || Sbjct 489 TCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGACG 430 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 429 AAGATCTGCATA 418 >seq72197 Length=52184 Score = 109 bits (120), Expect = 4e-19 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | |||| | || | || || ||||| || ||||| || Sbjct 20841 TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 20782 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || || ||| Sbjct 20781 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTYTGCTTCACGTTC 20722 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| ||| ||||| || || || || ||||| ||| Sbjct 20721 TCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTAACA 20662 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 20661 AATATCTGCATGTT 20648 >seq72113 Length=77669 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 39985 TCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAG 39926 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 39925 ATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 39866 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || ||||| |||||||| || Sbjct 39865 TCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTCTTGACG 39806 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 39805 AAGATCTGCATA 39794 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 39757 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 39698 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || || ||| Sbjct 39697 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTC 39638 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || ||||| || ||||| || Sbjct 39637 TCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACG 39578 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 39577 AAGATCTGCATA 39566 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || ||||| ||| Sbjct 39529 TCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAT 39470 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 39469 ATAAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 39410 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || || || |||| || ||||| || || || | |||||| || Sbjct 39409 TCGATCGTGTCGCTGGATTCCACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACG 39350 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 39349 AAGATCTGCATA 39338 >seq68586 Length=2644 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | |||| | || | || || ||||| || || || || Sbjct 189 TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 130 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||||| || ||| Sbjct 129 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATCTTCTGCTTCACGTTC 70 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || || | ||| ||||| || ||||| || ||||| || Sbjct 69 TCGATCGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACG 10 Query 34971 AAGATCTGC 34979 ||||||||| Sbjct 9 AAGATCTGC 1 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || || || || |||||||| Sbjct 417 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAG 358 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||||| || ||| Sbjct 357 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 298 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || ||||| || ||||| || Sbjct 297 TCAATGGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACG 238 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 237 AAGATCTGCATA 226 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | || | || || ||||| || || || || Sbjct 645 TCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAA 586 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 585 ATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 526 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || || || | || || || Sbjct 525 TCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACG 466 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 465 AAGATCTGCATA 454 >seq71540 Length=49709 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || ||||| | ||| | || | || || ||||| || || ||||| Sbjct 42923 TCCTTTTGAATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAA 42864 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| |||| | ||||||||||| ||||| || || ||| | Sbjct 42863 ATAAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGTATCTTTTGCTTTACGTTT 42804 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | ||| || |||| ||| ||||| || ||||| || ||||| ||| Sbjct 42803 TCTATGGTGTCTGAAGACTCCACCTCGAGGGTAATGGTCTTCCCCGTCAGCGTCTTAACA 42744 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 42743 AAGATTTGCAT 42733 >seq71072 Length=54149 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 13858 TCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAG 13917 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 13918 ATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 13977 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || |||| ||| || || || || || |||||||| || Sbjct 13978 TCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACG 14037 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 14038 AAGATCTGCAT 14048 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || || || || Sbjct 14086 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 14145 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || || ||| Sbjct 14146 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTTACGTTC 14205 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || ||||| |||||||| || Sbjct 14206 TCAATGGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACG 14265 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 14266 AAGATCTGCAT 14276 >seq72303 Length=46806 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || ||||| || Sbjct 30513 TCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAG 30454 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 30453 ATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 30394 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || |||| ||| ||||| || ||||| || ||||| || Sbjct 30393 TCAATGGTGTCGCTGGATTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACG 30334 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 30333 AAGATCTGCATGTT 30320 >seq71838 Length=148749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | | |||| || ||||| || ||||| || Sbjct 72852 TCCTTCTGGATGTTGTAGTCCGCGAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAG 72911 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||||| || || | Sbjct 72912 ATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTAACATTT 72971 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| || || || ||||| || ||||| || Sbjct 72972 TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTGACG 73031 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 73032 AAGATCTGCAT 73042 >seq21823 Length=199 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 11 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 70 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || | | Sbjct 71 ATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCAGGTTC 130 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || || || | |||||| || Sbjct 131 TCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACG 190 Query 34971 AAGATCTGC 34979 ||||||||| Sbjct 191 AAGATCTGC 199 >seq71761 Length=19511 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| ||||| | | ||| || | ||| | || ||| || |||||||| ||||| | Sbjct 7951 TCCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGC 8010 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | || | || || ||||| || ||||| || || || || |||||||| | || Sbjct 8011 CAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGG 8070 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| |||||||| || ||| | |||| || | || ||| || Sbjct 8071 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGAC 8130 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||| || || || | || || || |||||||||||| Sbjct 8131 CTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCATA 8179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324347107906008