Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq71540 122 7e-23 seq68586 91.5 1e-13 seq71072 87.8 1e-12 seq72113 86.0 5e-12 seq68691 86.0 5e-12 seq71838 82.4 6e-11 >seq71540 Length=49709 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||||||||| || || ||| |||||||||||||| || | || | || |||| Sbjct 42945 CAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGGGTGCGGCCGTC 42886 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| || |||||||| || || | || | |||||||||||| Sbjct 42885 CTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 42826 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||||| ||||| | | | ||||| | ||||||||| | ||||| || Sbjct 42825 TTGTATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACCTCGAGGGTAATGGT 42766 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||||| || || ||||| || ||||| ||| Sbjct 42765 CTTCCCCGTCAGCGTCTTAACAAAGATTTGCATGGTG 42729 >seq68586 Length=2644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| |||| || | ||| |||| || | |||||| || || || Sbjct 646 CTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 587 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||||| |||||||||||| ||||| || || || | Sbjct 586 AATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC-GT 528 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | | || || ||| ||||||||| | ||||| || || || ||||| |||| Sbjct 527 TCTC---GATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTT 471 Query 48751 TTACAAAAATCTGCAT 48766 | || || |||||||| Sbjct 470 TGACGAAGATCTGCAT 455 >seq71072 Length=54149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| ||||| || | || | ||| |||| || | |||||| ||||| || Sbjct 13857 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 13916 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||||| |||||||||||| ||||| || || || | Sbjct 13917 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC-GT 13975 Query 48695 ACCCA---CAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751 | || | | ||| | ||||||||| | ||||| || || || || | ||| || Sbjct 13976 TCTCAATGGTGTCGCTG--GACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTT 14033 Query 48752 TACAAAAATCTGCAT 48766 || || |||||||| Sbjct 14034 GACGAAGATCTGCAT 14048 >seq72113 Length=77669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| |||| || | ||| |||| || | |||||| ||||| || Sbjct 39986 CTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 39927 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | |||| |||||||||||| ||||| || || || | Sbjct 39926 GATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC-GT 39868 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | | || || ||| ||||||||| | ||||| || || ||||| | ||| | Sbjct 39867 TCTC---GATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTCT 39811 Query 48751 TTACAAAAATCTGCAT 48766 | || || |||||||| Sbjct 39810 TGACGAAGATCTGCAT 39795 >seq68691 Length=2609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || | || | ||| |||| |||| |||||| |||||||| Sbjct 382 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAA 323 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | || | |||||||||||| |||||||| || || | Sbjct 322 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCAC-GT 264 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | | || || ||| ||||||||| | ||||| || || ||||| | || | Sbjct 263 TCTC---GATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCT 207 Query 48751 TTACAAAAATCTGCAT 48766 | || || |||||||| Sbjct 206 TGACGAAGATCTGCAT 191 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| |||| || | || |||| || | ||||| |||||||| Sbjct 610 CTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 551 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||||| |||||||||||| |||||||| || || | Sbjct 550 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCAC-GT 492 Query 48695 ACCCA---CAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751 | || | | ||| | ||||||||| | ||||| || || || || | || || Sbjct 491 TCTCAATGGTGTCGCTG--GACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTT 434 Query 48752 TACAAAAATCTGCAT 48766 || || |||||||| Sbjct 433 GACGAAGATCTGCAT 419 >seq71838 Length=148749 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | | | || || | |||| Sbjct 72840 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTCCTGCCATCCTCGAGCTGC 72899 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| ||||| | || | |||||||||||| |||||| Sbjct 72900 TTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTC 72959 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || ||| | | | || |||| ||||||||| | || || || || ||||| Sbjct 72960 TGCTTAACATTTTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTA 73019 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 73020 AGGGTCTTGACGAAGATCTGCAT 73042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380601419115753