Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq71032 253 4e-62 seq71924 223 6e-53 >seq71032 Length=21228 Score = 253 bits (280), Expect = 4e-62 Identities = 965/1488 (65%), Gaps = 64/1488 (4%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||||||||||||| || |||||| || || || ||||| | || Sbjct 15758 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGA 15699 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA-GGC 213066 ||| |||||||| ||||| || || || |||||| | ||||| | ||| ||| Sbjct 15698 GGCAGTGGGCATAGGAGCGACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGGC 15639 Query 213067 GCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 | || | | |||| ||||| | | | || | | |||||||| | || Sbjct 15638 ACGCAAAGTGT-CCCAATCCCAGCGGTCCGAGGGAACG---------ACGTTCCAAAGGT 15589 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | ||| | | ||| ||| |||| |||| ||||| ||||||| ||| || | Sbjct 15588 CGGGCTGGAGCAGGCCCTTGGAAGCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTT 15529 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||| |||| ||||||||| || |||||||| | |||||||| || || || | | Sbjct 15528 CCTTCGCCATCTCGCAGGAGGCGGTGAGGGCAGCATGATAGATGGTCTCGAAGATGGCGC 15469 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGAC------GTGAAGGGCATCATCATGCGTTGGAACA 213300 ||| |||| |||||| ||| | | |||| |||||| |||| || | Sbjct 15468 GGTTCAGCTCGCGGGCCTCAGGGCTCTCCCAAGGGAAGCGCATCAGCATG------AATA 15415 Query 213301 CATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGC 213360 | || || || ||||| || || |||||||| || ||||| | || || || ||| | Sbjct 15414 CGTCGGCGAGTCCCTGCACGCCTATGCCGATCGGCCTGTGACGCATATTCGAATTGCGGG 15355 Query 213361 ACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTT 213420 |||| || ||||||| ||||| ||| |||| |||||| || || ||| | || | Sbjct 15354 CCTCCGGCACGGGGTAATAGTTGATGTCAATGACCTTGTTAAGATTCTTGGTTACGACCT 15295 Query 213421 TGGTGACATGGGCCAGGTACTCGTGATTGAACACGT-AGCCCCCGTCCTGCACAAACTCA 213479 | || | | ||| | || ||| | || || || | | || || || | Sbjct 15294 TAACCACGTCGTGCAGCTTCTTGTGGTCAAATTCGCGAGTCGCAGTGATG----AATTTG 15239 Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 || ||||| | ||||| |||||| || ||||| || | | | ||| ||| || Sbjct 15238 GGAAGGGCAAGAGAGGCCAAGTTGCACACAGCCACTTCGTCGGGGGAAGTGAACTGGATC 15179 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | ||| ||||||| |||| | |||||||||| |||| ||| ||||| ||||| ||| Sbjct 15178 ACCTCTGTGCACAAGTTGGACGACTGGATGGTGCCGAGGTGCTGCTGGTTAGACTT-GCG 15120 Query 213600 TTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 | |||| | |||||||||||||||||||| | || ||||| | ||| ||| | || || Sbjct 15119 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGAGTGCCCGTCTCAATCTGAGACTCGAGGAT 15060 Query 213659 CTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGT 213717 | ||||| || |||| ||||| || || || | | | || | | | ||||| Sbjct 15059 AGAGAACCAGA-GTTCCTGAGCCTTCACGACACGGCGGGC-GCGACCCTCCT--GCTCGT 15004 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC--GGACAGGA 213775 | | ||||| |||| || || |||| ||||| | ||| ||| || | | Sbjct 15003 AGCGCTCGTACAGCTGCTTAAACTCGTCTCCCCAAGTATCGAACAGACCCGGGGCCTCGT 14944 Query 213776 TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGG 213835 | ||| || | ||| |||||| ||| | || | || | || |||||| ||||| || Sbjct 14943 T--GGGGCAGAAGAGCGACCAGTCACCGCCGTCACGCACACGCTCCATGAAAAGGTCGGG 14886 Query 213836 GACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 ||||||| || ||| || || | | | ||| ||| || || || Sbjct 14885 AACCCACAAACCGTAGAAGAGATCGCGAGCACGGTGCTCCTCCTTACCGTGATTCTTCTT 14826 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 || || || || || ||||| || || ||||| ||||| | ||||||||||||||| || Sbjct 14825 GAGCTCGAGGAATTCGAAGATATCGGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCTCC 14766 Query 213956 CGGCCTCTT---GCCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GTTGAAGATGCGCAGG 214010 | | ||| ||| || ||||| || ||| | || | |||| | | ||| || Sbjct 14765 CTTGCGCTTACCGCCACCTTGGTCAACGTAGC--GAGCAGTGTCGTTGTATACGCGAAGC 14708 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | || | || || || || |||||||| || || || ||| ||| || | Sbjct 14707 ATCGGAATGAGACCATTCGAGGTGCCGTTGGTGCCGCGGATGTAAGAGTTGGAAGCTC-- 14650 Query 214071 AGGTTGCTCATGGAGAGC----CCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCG 214126 || ||| || | ||| || || || || ||| |||| ||||| | ||| || | Sbjct 14649 -GGATGC-GGTGTACAGCAAGGCCGATACCCCCAGCGGACTTAGAGATGAGGGCACACTG 14592 Query 214127 CCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCT 214186 | | | ||| || ||| || | || ||| ||| | | | | || | |||||| Sbjct 14591 CTTGAGAGTGTCGTAGATCCCTTCAATTGAGTCCTCTTTCATGGTAAGGAGGAAGCACGA 14532 Query 214187 CGAGAGCTG-GGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAA 214245 || ||||| |||| ||| | ||| | ||||| || || ||| | || ||| | | | Sbjct 14531 AGAAAGCTGCGGGCGAGGA-GTGCCGGCATTGAAGAGGGTAGGGGTAGCGTGGGTGA-AG 14474 Query 214246 ACTTG-TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATC 214304 | ||| | ||||| || |||||| || | || | ||| || | || |||||| | Sbjct 14473 AGTTGCTGGGAGAGAAGGTCGTAGGTTTCGATAACAGCGGGAATATTGTCCTTGTGAAGG 14414 Query 214305 TGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTG---GGGCCC 214361 | |||| | ||||||||| ||||| || ||||| | | || ||| | | Sbjct 14413 CCAACAGCGACGCGCATCAGCATATGCTGTGGTCTCTCGA-CGATC--TTGCCATCGATC 14357 Query 214362 TTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 |||| || ||||| ||||| |||||||| || || ||||| | |||| Sbjct 14356 TTGAAAAGATAGGAACGCTCGAGAGTCTTAAAACCGAAGTATGTGTAG 14309 >seq71924 Length=31871 Score = 223 bits (246), Expect = 6e-53 Identities = 571/860 (66%), Gaps = 32/860 (4%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | | ||| |||||||| ||||| ||||| | |||||| |||||| Sbjct 8376 GTACTCGCCAACACGACGCTCGAAGAAGTTGGTCTTGCCCTCGAGCGAGATAAGCTCCAT 8435 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || |||||||||||| ||| | | | | ||| ||| | ||| ||| | Sbjct 8436 CCAGGGGAAGGGGTTGGTCTTGTGGAA-ATGCTTCTCACAGCCAAGAG--CCACGAGGAG 8492 Query 47962 A---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || |||||| | |||||||| | ||||||| | ||||||||| ||||| | Sbjct 8493 ACGGTCGGCGACGAATTCGATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGAGC 8552 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||| | || || |||| |||||||||||||||| || || || | ||| Sbjct 8553 CACGGGGAGAGACTCGGTGACGAACTCCTTCTCTATCTCGACAGCCTCGAGAATGATCGT 8612 Query 48079 CTTA---ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 |||| || || | |||||||||||| | | || || |||||| | || || Sbjct 8613 CTTAGGAACCTCGGGC---GAGGGTTTGTTG---ACGAGCATGCTATAGAGGAGACAAGC 8666 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||| | || ||||| |||||||||||| ||||||| ||| |||| || || Sbjct 8667 AAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGTCCGGG 8726 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || || ||||| || || | ||| ||| |||||||| ||||| Sbjct 8727 CATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAAATGCC 8786 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG------AAGCGTTCTTGTCTGA 48309 ||| || || || || | |||| | ||| |||| | | | |||| | Sbjct 8787 CTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGGTCTCCTGGCCCTCCTTGCC--- 8843 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | ||||| || |||||||| |||| | |||| || || ||||| || Sbjct 8844 GATCCACTTGATAGCCCACTCGGCCTTCTTTTTGACTGAAGGCACAGTTTCGATGGCGCG 8903 Query 48370 GAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||||| | | ||| ||| | |||| || ||||| || || | || Sbjct 8904 GAAGAGGCGATCCTT---CTCGATAGGGTCCTTGACGTAGGTGTCGATAAGAAGGGAATA 8960 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | || || || ||||| ||||| || |||||| | ||||| Sbjct 8961 CATCTCCGAGTGAATGTTTTCAATGGCGATTTGGAATCCATAGAAGCAACGCGCCTCGGG 9020 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545 || |||||||| | ||| | |||| ||||||||| || || || || || Sbjct 9021 AACTTGCACTTCCTTCATGAAGC-GAACAGCGAGATTCTCAGCAACAATACCGTCACTAG 9079 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || |||||||| || || || |||| ||| || ||||| | ||||| | || Sbjct 9080 CCGCGAAGAAGGCCAGCACGTGCTTAATGAAGTGCTTCTCGTCCTTAGTGAGCGAGGCCC 9139 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | | ||| |||| || || |||||||| ||||||||||||| || || | Sbjct 9140 AGTGATTCAAGTCGCTGCCTAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCAGCCT 9199 Query 48666 TTTTGTACATGCCCCATATG 48685 | ||||| | |||| ||| Sbjct 9200 TCTTGTAGAACTCCCAGATG 9219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930689634730240