Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq71924 199 7e-46 seq71032 168 1e-36 >seq71924 Length=31871 Score = 199 bits (220), Expect = 7e-46 Identities = 446/656 (68%), Gaps = 24/656 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | |||||||||||| | || |||||| |||||||| | ||||| Sbjct 9218 ATCTGGGAGTTCTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAAGAAGTCGATCTA 9159 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | || ||| || | |||| | | || | || |||||| |||| || | ||| || Sbjct 9158 GGCAGCGACTTGAATCACTGGGCCTCGCTCACTAAGGACGAGAAGCACTTCATTAAGCAC 9099 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| |||| ||||| || || ||| ||||| || |||||||| | | ||| Sbjct 9098 GTGCTGGCCTTCTTCGCGGCTAGTGACGGTATTGTTGCTGAGAATCTCGCTGTTCGCTTC 9039 Query 25657 ACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||||||||| || | | |||| || ||||| || ||||| || ||||| || Sbjct 9038 ATGAAGGAAGTGCAAGTTCCCG-AGGCGCGTTGCTTCTATGGATTCCAAATCGCCATTGA 8980 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 ||| | ||||| ||| ||||| || ||||| || || ||| | | ||| Sbjct 8979 AAACATTCACTCGGAGATGTATTCC---CTTCTTATCGACACCTACGTCAAGGACCCTAT 8923 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGC 25831 ||||| ||||| || || | |||||||| || || || |||| | |||||| Sbjct 8922 CGAGAAGGATCGCCTCTTCCGCGCCATCGAA-ACTGTGCCTTCAGTCAAAAAGAAGGCCG 8864 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGC---GCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| || ||||||||| || || || | || || | ||||| || | | Sbjct 8863 AGTGGGCTATCAAGTGGATCGGCAAGGAGGGCCAGGAGACCTTCGCTGAGCGTCTCATTG 8804 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 |||||||| || |||||||| || ||| || || ||| ||||||| ||||| Sbjct 8803 GTTTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCT-CCATCTTTTGGCTG 8745 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || ||||||||| || | |||||||||||||||||||||| | |||||| Sbjct 8744 AAGAAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGACGAG 8685 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||||| ||| | || ||||| || || ||||| | || | || ||||||| || Sbjct 8684 GGTCTTCACTGCGACTTTGCTTGTCTCCTCTATA---GCATGCTCGTCAACAAACCCTCG 8628 Query 26068 CAAGAGACCGT--CT-ACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | ||| || || | | ||||| |||||||| ||||| ||||||||||| Sbjct 8627 CCCGAG---GTTCCTAAGACGATCATTCTCGAGGCTGTCGAGATAGAGAAGGAGTT 8575 >seq71032 Length=21228 Score = 168 bits (186), Expect = 1e-36 Identities = 654/1015 (64%), Gaps = 46/1015 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 || |||||||| || ||||||||||| ||||| ||| || ||| || |||| || Sbjct 15505 GTGAGGGCAGCATGATAGATGGTCTCGAAGATGGCGCGGTTCAG-CTCGCGGGCCTCAGG 15447 Query 221476 AG------AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 ||| |||| |||| |||||| || |||||||| |||||||| || || Sbjct 15446 GCTCTCCCAAGGGAAGCGCAT---CAGCATG---AATACGTCGGCGAGTCCCTGCACGCC 15393 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAG 221587 || ||||| |||||||| | | | || ||| |||| || || |||||||| ||| || Sbjct 15392 TATGCCGATCGGCCTGTGACGCATATTCGAATTGCGG--GCCTCCGGCACGGGGTAATAG 15335 Query 221588 TTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC 221647 |||| ||| || | ||||| || ||| || | ||| |||||||| ||| ||||||| Sbjct 15334 TTGATGTCAATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTC 15275 Query 221648 TGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 | ||| | | || |||| |||| | | | || | |||||| Sbjct 15274 TTGTGGT------CAAATTCGCGA--GTCGCAGTGATG-------AATTTGGGAAGGGCA 15230 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | ||||| ||| ||||| ||||| ||||| | || |||| || | |||||| Sbjct 15229 AGAGAGGCCAAGTTGCACACAGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTG 15170 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || | |||| ||| |||||| || ||||| | || ||||||||||| ||| | | Sbjct 15169 CACAAGTTGGACGACTGGATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAG 15110 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||||||||| ||||| ||| ||||| | ||||| | | || || | |||| Sbjct 15109 TCCTTGTAGAGCATGTAGGGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAG 15050 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946 ||||| ||| || |||| | | | |||||| || || || | || Sbjct 15049 AGTTC-CTGAGCCTTCACGACACGGCGGGCGCGACCCTC---CTGCTCGTAGCGCTCGTA 14994 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 ||| | ||||| || || | | ||| ||| || || | | ||| || | Sbjct 14993 CAGCTGCTTAAACTCGTCTCCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAA 14934 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || ||||| | ||| || | || |||||| ||||| || | ||||| | Sbjct 14933 GAGCGACCAGTCACCGCCGTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACC 14874 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | |||||||| | | || ||||||||| |||| || ||| | || || | || Sbjct 14873 GTAGAAGAGATCGCGAGCACGGTGCTCCTCCTTACCGTGATTCTTCTTGAGCTCGAGGAA 14814 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 || || || || || ||||| ||||| || |||| ||| | || || ||||| Sbjct 14813 TTCGAAGATATCGGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACC 14754 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||| || | || | | ||| | ||||| | | |||||| |||| | || | Sbjct 14753 GCCACCTTGGT-CAACGTAGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGAC 14695 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG---G 222302 | || || ||||||||||| ||||| | | || | || | | | Sbjct 14694 CATTCGAGGTGCCGTTGGTGCCGCGGATGTAAGAGTTGGAAGCTC---GGATGCGGTGTA 14638 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 ||| | ||||||||| || ||| || ||||| | ||| || |||||||||||| Sbjct 14637 CAGCAAGGCCGATACCCCCAGCGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGT 14578 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 ||| || || || |||||||| || | | | || || || || || || | ||| Sbjct 14577 AGATCCCTTCAATTGAGTCCTCTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTG 14523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928004067739840