Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq71032 284 1e-71 >seq71032 Length=21228 Score = 284 bits (314), Expect = 1e-71 Identities = 1166/1815 (64%), Gaps = 54/1815 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTT--CAACGGCTCGATGGCATCCTCA 75203 ||||| ||| | || || || ||| ||||||| ||| | ||||||||| || Sbjct 14316 TACTTCGGTTTTAAGACTCTCGAGCGTTCCTATCTTTTCAA--GATCGATGGCAAGATCG 14373 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || | |||||| | ||| | ||||| ||||| | ||| | ||| ||| | ||| Sbjct 14374 TCGAGAGACCACAGCATATGCTGATGCGCGTCGCTGTTGGCCTTCACAAGGACAATATTC 14433 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 |||| | || || |||||| | ||||| | |||| ||||| || || | Sbjct 14434 CCGCTGTTATCGAAACCTACGACCTTCTCTCCCAGCAACTCTTCACCCACGCTACCCCTA 14493 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 ||||||||||||| || || || | |||||| | || |||||||| | ||| | Sbjct 14494 CCCTCTTCAATGCCGGCACTCCTCGCCCGCAGCTTTCTTCGTGCTTCCTCCTTACCATGA 14553 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 | ||||||||||| | || ||||| | ||||| | | ||||||| | ||||| |||| Sbjct 14554 AAGAGGACTCAATTGAAGGGATCTACGACACTCTCAAGCAGTGTGCCCTCATCTCTAAGT 14613 Query 75444 GGGCTGGGGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGTAT 75498 ||||||||||| || | || ||| | ||| |||| || ||| || Sbjct 14614 CCGCTGGGGGTATCGGCCTTGCTGTACACCGCATCC-----GAGCTTCCAACTCTTACAT 14668 Query 75499 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 75558 || || || || || || ||||| | ||||| ||||||||||||| |||| ||| Sbjct 14669 CCGCGGCACCAACGGCACCTCGAATGGTCTCATTCCGATGCTTCGCGTATACAACGACAC 14728 Query 75559 AGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 || ||||| || | |||| || || |||||||| || | || ||||| | || Sbjct 14729 TGCTCGCTACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCCTTTGCCATCTACCTTGA 14788 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAG 75674 || ||||||||||||||| | || ||||| ||| | | || || || ||| | || | Sbjct 14789 GCCCTGGCATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAG-AATCACGGTAAGGAGG 14847 Query 75675 AGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 || | | ||| | | |||||||| | ||||| |||| |||||||||||| |||| Sbjct 14848 AG-CACCGTGCTCGCGATCTCTTCTACGGTTTGTGGGTTCCCGACCTTTTCATGGAGCGT 14906 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 || || || ||| | ||||| || ||||| || || |||| || ||||| | ||| Sbjct 14907 GTGCGTGACGGCGGTGACTGGTCGCTCTTCTGCCCCAACGAGGCCCCGGGTCTGTTCGAT 14966 Query 75794 GCGGTGGGTGAGGAGTTTGAAGC-CCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAA 75852 | ||| || |||||| |||| || ||| || || |||||||| | ||| Sbjct 14967 ACTTGGGGAGACGAGTTT-AAGCAGCTGTACGAGCGCTACGAGCAGGAGGGTCGCGCC-- 15023 Query 75853 TGCGAC-TGT--ACCAGCCGC-CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || | ||| || | | || | ||| |||| ||| | || |||| |||| Sbjct 15024 --CGCCGTGTCGTGAAGGCTCAGGAACTCTGGTTCTCTATCCTCGAGTCTCAGATTGAGA 15081 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || || || || ||||| |||||||| | || ||| ||| |||||| || | Sbjct 15082 CGGGCACTCCCTACATGCTCTACAAGGACTCCTGCAACCGCAAGTCTAACCAGCAGCACC 15141 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 | || || ||| || || || | ||||| || | | ||| ||| || | Sbjct 15142 TCGGCACCATCCAGTCGTCCAACTTGTGCACAGAGGTGATCCAGTTCACTTCCCCCGACG 15201 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 | |||||| ||||| ||||| || | |||||||| || | ||| | | ||||| Sbjct 15202 AAGTGGCTGTGTGCAACTTGGCCTCTCTTGCCCTTCCCAAATTCATCACT---GCGACTC 15258 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 || ||||| | | || || || || | ||| | || ||||| ||||| ||| Sbjct 15259 GCGAATTTGACCACAAGAAGCTGCACGACGTGGTTAAGGTCGTAACCAAGAATCTTAACA 15318 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 |||||||||| || | ||| ||||| | || || || || |||||||| |||| Sbjct 15319 AGGTCATTGACATCAACTATTACCCCGTGCCGGAGGCCCGCAATTCGAATATGCGTCACA 15378 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCAT 76268 | || || || | || || || || ||||| || ||||| || || |||| | | | Sbjct 15379 GGCCGATCGGCATAGGCGTGCAGGGACTCGCCGACGTATTCATGCTGATGCGCTTCCCTT 15438 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAA-TGCTCGTATCTTTGAAACCATGTATCACGCA 76327 || ||| ||| ||| |||| || | ||||| || ||||| ||||| || Sbjct 15439 GGGAGAGCCCTGAGGCCCGCGAGCTGAACCGCGC-CATCTTCGAGACCATCTATCATGCT 15497 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 |||| || || || |||| | | ||||| |||| ||| | |||||| Sbjct 15498 GCCCTCACCGCCTCCTGCGAGATGGCGAAGGAACAAGGCGCCTACTCGACTTACGAGGGT 15557 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC 76447 |||||||| ||| | || |||| ||| || | ||| | | | || | | | Sbjct 15558 TCTCCCGCTTCCAAGGGCCTGCTCCAGCCCGACCTTTGGAACGTCGTTCCCTCGGACCGC 15617 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | || ||||| | | | ||| | ||||| | ||| || | Sbjct 15618 TGGGATTGGGACACTTTGCGTGCCGACATTGCTCGTCACGGTCTCAGGAACTCGCTGCTC 15677 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||||| ||| | || ||| | || ||||| || ||||| || Sbjct 15678 GTCGCTCCTATGCCCACTGCCTCGACCTCTCAGATCCTCGGCAATAACGAGTGCTTCGAG 15737 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | ||||||||| | | | ||| || ||||| ||| | | |||||| Sbjct 15738 CCCTACACCTCCAACATCTACACTCGCCGCATCCTTGCTGGTGACTTTACCGTCGTCAAC 15797 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 ||||||| || |||||| || || || || |||||| | | ||| | Sbjct 15798 GAGCACCTGCTCCGTGACCTTCAGGAGCGCGGCCTGTGGTCCCCCGCCCTCAAGAACAAG 15857 Query 76688 ATGGTG----AAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743 ||||| | | | ||||| | || ||| || || || || ||| |||| Sbjct 15858 CTGGTGGCCCACAAC----GGTTCGGTGCAGCGCATCGAGGAGATACCTGACGATCTCAA 15913 Query 76744 GAATCTCTACCGCACAGTGTGGGAAA----TCAAGATGAAAGATGTCATTGACATGGCCG 76799 ||| || ||| ||||||||||| | ||| || | || || |||||||| | Sbjct 15914 GAAGCTTTACAAGACAGTGTGGGAGATTCCTCAGCGTGTA----GTAATCGACATGGCTG 15969 Query 76800 CAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCA 76858 | ||||| ||||| ||||| ||||||||| | | || | | ||||| || Sbjct 15970 CCGATCG-CTCCGCTTATATTGACCAAAGTCAATCTCTCAACATTTACATGGGCGAGCCT 16028 Query 76859 ACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGA 76918 | | ||||||| | || ||||| | ||||| ||||| |||| || || || || Sbjct 16029 TCTTTCGCCAAGCTTACGTCCATGCACTTCTACGCCTGGAATAAGGGTCTGAAGACTGGC 16088 Query 76919 ATGTACTATCTCCGA 76933 |||||||| || ||| Sbjct 16089 ATGTACTACCTGCGA 16103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596029622483680