Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq71447 123 7e-23 seq71032 116 1e-20 seq69983 93.3 1e-13 seq69735 93.3 1e-13 seq69734 93.3 1e-13 seq69036 93.3 1e-13 >seq71447 Length=37327 Score = 123 bits (136), Expect = 7e-23 Identities = 196/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| || ||||| || | || || || || ||||| || ||||| | |||||| Sbjct 33324 CGCTGGATGTAACCCGTCTCGGCCGTCTTCACGGCGGTATCGATGAGACCCTCGCGACCA 33265 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||| || |||||||| | ||| | ||| || || | | | | ||| |||| ||| Sbjct 33264 CCCATGGCGTGGAAGAAGAACTCCTGCGGAGTCAGGCCTCGCAGATACGAGTTCTCGACG 33205 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || || |||| |||||| | |||| |||| ||||| ||||| || | || | Sbjct 33204 AATCCTCGCGACTCGGGGCCGTAGTCGTCCTTGACGAAGTGGGGCAGCGTTCGGTCCCGG 33145 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 || | | ||||||||||| || || ||||||||||| |||| ||||| | || |||| Sbjct 33144 AAGGAGAAGGGGATACGCTTGCCCTCCACGTTCTGCTGGCCCACGCACGCCAGCACCTGC 33085 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || | | ||||||| || |||||| ||||| Sbjct 33084 GAGATGTTGATGGCCGTGCCCTTCGATCCAGCAACCACCAT 33044 >seq71032 Length=21228 Score = 116 bits (128), Expect = 1e-20 Identities = 447/695 (64%), Gaps = 13/695 (2%) Strand=Plus/Minus Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||||| ||| || || ||||||||| | | || ||||||||| || | ||| || | Sbjct 15170 GCACAAGTTGGACGACTGGATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGA 15111 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 |||||||| || ||||| || || || ||||| ||||| | || || || | ||| Sbjct 15110 GTCCTTGTAGAGCATGTAGGGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCA 15051 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAG 155827 ||| || | || || | | | | || ||| ||| || | ||||| Sbjct 15050 GAGTTCCTGAGCCTTCACGACACGGCGGGCGCGACCCTCCTGCTCGTAGCGCTCGTACAG 14991 Query 155828 CGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | | || || || || || ||| ||| || ||| || | |||||| || | Sbjct 14990 C-TGCTTAAACTCGTCTCCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGA 14932 Query 155887 GCGACCAAATTTTATTACCGATT---ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||||||| | | ||| ||||||||||| || | || |||| | | Sbjct 14931 GCGACCAG---TCACCGCCGTCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAAC 14875 Query 155944 CATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 | ||||| || || | || | || |||||| | |||||||||||| ||||| | | Sbjct 14874 CGTAGAAGAGATCGCGAGCACGGTG-CTCCTCCTTACCGTGATTCTTCTTGAGCTCGAGG 14816 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT- 156061 ||||| ||||| | ||| ||||| || || || ||||| || || | ||| Sbjct 14815 AATTCGAAGATATCGGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTA 14756 Query 156062 --GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 |||||| || || || || |||||||| | ||| | || | ||||| ||||| | | Sbjct 14755 CCGCCACCTTGGTCAACGTAGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGA 14696 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || ||||| ||||| ||||| || | || || | || | || | | Sbjct 14695 CCATTCGAGGTGCCGTTGGTGCCGCGGATGTAAGAGTTGGAAGCTCGGATGCGGTGTACA 14636 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || ||||| || | | ||||| || | || || | ||| | ||| | | | Sbjct 14635 GCAAGGCCGATACCCCCAGCGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAG 14576 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || |||||||| || || |||| ||| | || || |||||||| | || || || Sbjct 14575 ATCCCTTCAATTGAGTCCTCTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGA 14516 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 || || || || ||||| || ||||| || || || Sbjct 14515 GGAGTGCCGGCATTGAAGAGGGTAGGGGTAGCGTG 14481 >seq69983 Length=7393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| |||||| ||||| || |||| |||||| || || | | | Sbjct 6284 TGGCCGATGGTCATACGGGAGGGAATGGCATGAGGGTTGACGATGATATCCGGGGTTATT 6225 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || | ||| ||| | || | || ||||| || Sbjct 6224 CCCTCGATGGTGAAGGGCATGTCCTCTTGG-CGATACATGATGCCCACTGTGCCCTTCTG 6166 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||| || |||||||||||||| || || Sbjct 6165 TCCGTGTCGCGAACTGAACTTATCCCCGAT 6136 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || || || || ||||| || || || ||| | |||| |||| ||| | | | Sbjct 6889 CATACGTGTACTCTGTAGGCGTCGGACTGATCAAACAGCCTCTCCTTCAGGAACTGCGCT 6830 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || |||||||| || |||||||||||||| ||||| | || |||||||||||| Sbjct 6829 GCGCCATGGGAAATCATGCAGTCACGCTCCATTTCTCCGAATCTGAGGCCACCATCGCGA 6770 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | ||| || || | ||||| | ||||| | || ||| || | ||| ||| Sbjct 6769 GACCTTCCTTCCACCGGCTGCCTCGTGAGGATCTGCACAGGGCCTCGCGCGCGAGAATGA 6710 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | |||||| ||||| || | || ||| | | || || ||||||| Sbjct 6709 ATCTTATCGTCTACCATGTGCTTCAGCCTTTGATAGTAAGTAGGGCCAATGAAGA 6655 >seq69735 Length=7386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| |||||| ||||| || |||| |||||| || || | | | Sbjct 1110 TGGCCGATGGTCATACGGGAGGGAATGGCATGAGGGTTGACGATGATATCCGGGGTTATT 1169 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || | ||| ||| | || | || ||||| || Sbjct 1170 CCCTCGATGGTGAAGGGCATGTCCTCTT-GGCGATACATGATGCCCACTGTGCCCTTCTG 1228 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||| || |||||||||||||| || || Sbjct 1229 TCCGTGTCGCGAACTGAACTTATCCCCGAT 1258 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || || || || ||||| || || || ||| | |||| |||| ||| | | | Sbjct 505 CATACGTGTACTCTGTAGGCGTCGGACTGATCAAACAGCCTCTCCTTCAGGAACTGCGCT 564 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || |||||||| || |||||||||||||| ||||| | || |||||||||||| Sbjct 565 GCGCCATGGGAAATCATGCAGTCACGCTCCATTTCTCCGAATCTGAGGCCACCATCGCGA 624 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | ||| || || | ||||| | ||||| | || ||| || | ||| ||| Sbjct 625 GACCTTCCTTCCACCGGCTGCCTCGTGAGGATCTGCACAGGGCCTCGCGCGCGAGAATGA 684 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | |||||| ||||| || | || ||| | | || || ||||||| Sbjct 685 ATCTTATCGTCTACCATGTGCTTCAGCCTTTGATAGTAAGTAGGGCCAATGAAGA 739 >seq69734 Length=6559 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| |||||| ||||| || |||| |||||| || || | | | Sbjct 3737 TGGCCGATGGTCATACGGGAGGGAATGGCATGAGGGTTGACGATGATATCCGGGGTTATT 3678 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || | ||| ||| | || | || ||||| || Sbjct 3677 CCCTCGATGGTGAAGGGCATGTCCTCTTGG-CGATACATGATGCCCACTGTGCCCTTCTG 3619 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||| || |||||||||||||| || || Sbjct 3618 TCCGTGTCGCGAACTGAACTTATCCCCGAT 3589 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || || || || ||||| || || || ||| | |||| |||| ||| | | | Sbjct 4342 CATACGTGTACTCTGTAGGCGTCGGACTGATCAAACAGCCTCTCCTTCAGGAACTGCGCT 4283 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || |||||||| || |||||||||||||| ||||| | || |||||||||||| Sbjct 4282 GCGCCATGGGAAATCATGCAGTCACGCTCCATTTCTCCGAATCTGAGGCCACCATCGCGA 4223 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | ||| || || | ||||| | ||||| | || ||| || | ||| ||| Sbjct 4222 GACCTTCCTTCCACCGGCTGCCTCGTGAGGATCTGCACAGGGCCTCGCGCGCGAGAATGA 4163 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | |||||| ||||| || | || ||| | | || || ||||||| Sbjct 4162 ATCTTATCGTCTACCATGTGCTTCAGCCTTTGATAGTAAGTAGGGCCAATGAAGA 4108 >seq69036 Length=6556 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| |||||| ||||| || |||| |||||| || || | | | Sbjct 2820 TGGCCGATGGTCATACGGGAGGGAATGGCATGAGGGTTGACGATGATATCCGGGGTTATT 2879 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || | ||| ||| | || | || ||||| || Sbjct 2880 CCCTCGATGGTGAAGGGCATGTCCTCTT-GGCGATACATGATGCCCACTGTGCCCTTCTG 2938 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||| || |||||||||||||| || || Sbjct 2939 TCCGTGTCGCGAACTGAACTTATCCCCGAT 2968 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || || || || ||||| || || || ||| | |||| |||| ||| | | | Sbjct 2215 CATACGTGTACTCTGTAGGCGTCGGACTGATCAAACAGCCTCTCCTTCAGGAACTGCGCT 2274 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || |||||||| || |||||||||||||| ||||| | || |||||||||||| Sbjct 2275 GCGCCATGGGAAATCATGCAGTCACGCTCCATTTCTCCGAATCTGAGGCCACCATCGCGA 2334 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | ||| || || | ||||| | ||||| | || ||| || | ||| ||| Sbjct 2335 GACCTTCCTTCCACCGGCTGCCTCGTGAGGATCTGCACAGGGCCTCGCGCGCGAGAATGA 2394 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | |||||| ||||| || | || ||| | | || || ||||||| Sbjct 2395 ATCTTATCGTCTACCATGTGCTTCAGCCTTTGATAGTAAGTAGGGCCAATGAAGA 2449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470452097764507