Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq71540 125 6e-24 seq71761 114 1e-20 seq68586 104 2e-17 seq72113 95.1 1e-14 seq72197 93.3 3e-14 seq71072 91.5 1e-13 seq68691 91.5 1e-13 seq21823 91.5 1e-13 >seq71540 Length=49709 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || | || || || ||||||||| |||| |||| || Sbjct 42733 ATGCAAATCTTTGTTAAGACGCTGACGGGGAAGACCATTACCCTCGAGGTGGAGTCTTCA 42792 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||||| || || || ||| | || || ||| Sbjct 42793 GACACCATAGAAAACGTAAAGCAAAAGATACAAGACAAGGAGGGCATCCCGCCTGACCAG 42852 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| ||||||||| ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 42853 CAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCCGACTACAAT 42912 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||||| | || ||||| ||||| | || ||||| Sbjct 42913 ATTCAAAAGGAGTCTACCCTCCATTTGGTGCTGAGACTTCGTGGGGG 42959 >seq71761 Length=19511 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| || || ||||| |||||||| |||| ||| | || Sbjct 8178 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTCGAGTCCAGC 8119 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || |||||| | ||| || ||| Sbjct 8118 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 8059 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||||| || || || ||||| ||||||| || |||| ||||||||| Sbjct 8058 CAGCGTCTTATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 7999 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||||||||| ||||| | ||| | |||||| || Sbjct 7998 ATTCAAAAGGAATCTACTCTCCACCTTGTGTTGCGA 7963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| ||||| || | || ||||| |||||||| |||| ||| | Sbjct 8409 AACATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATTACTCTCGAGGTCGAGTCC 8350 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || || ||||| || || |||||| | ||| || Sbjct 8349 AGCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 8290 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | || ||||| ||||| ||||||| || |||| |||||| Sbjct 8289 CAGCAGCGCCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTAC 8230 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || |||||||| || Sbjct 8229 AACATCCAGAAGGAGTCGAC 8210 >seq68586 Length=2644 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| || || ||||| |||||||| |||| |||| | || Sbjct 455 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 514 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 515 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 574 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||||| || || || ||||| ||||||| || | || ||||||||| Sbjct 575 CAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCTGACTACAAC 634 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || |||||||||||||| | ||| | || | | |||| || ||||| Sbjct 635 ATCCAAAAGGAGTCTACCCTCCACCTCGTCCTCCGCCTGCGCGGTGGAAA 684 >seq72113 Length=77669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || ||||| |||||||| |||| ||| | || Sbjct 39339 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTGGAATCCAGC 39398 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 39399 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 39458 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || ||||| ||||| ||||||| || |||| ||||||||| Sbjct 39459 CAGCGCCTTATATTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 39518 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 39519 ATCCAGAAGGAGTCAACTCTCCACCTCGTG 39548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| |||| |||| | || Sbjct 39567 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 39626 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | ||| || ||| Sbjct 39627 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 39686 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 39687 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 39746 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| | ||| Sbjct 39747 ATCCAGAAGGAGTCTACCCTCCACCTCGTG 39776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| |||| ||||| |||||||| |||| |||| | || Sbjct 39795 ATGCAGATCTTCGTCAAGACTCTAACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 39854 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | || || ||| Sbjct 39855 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 39914 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || | || ||||||||| Sbjct 39915 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCTGACTACAAC 39974 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 39975 ATCCAAAAGGAGTCTAC 39991 >seq72197 Length=52184 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| || || | || ||||| ||||||||| |||| |||| | Sbjct 20648 AACATGCAGATATTTGTTAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTGGAGTCC 20707 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || || ||||| || || || ||| | ||| || Sbjct 20708 AGCGACACGATCGAGAACGTGAAGCARAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 20767 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| || || || ||||| ||||||| | || | || |||||| Sbjct 20768 CAGCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCTGACTAC 20827 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| | ||| Sbjct 20828 AACATCCAGAAGGAGTCGACTCTCCACCTCGTG 20860 >seq71072 Length=54149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| ||||| ||| | || |||| | || Sbjct 14276 ATGCAGATCTTCGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCCAGC 14217 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||||| || || || ||| | || || ||| Sbjct 14216 GACACCATTGAGAACGTAAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 14157 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||| ||||||| | || | || ||||||||| Sbjct 14156 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 14097 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| | ||| | ||| Sbjct 14096 ATCCAGAAGGAGTCGACGCTCCACCTCGTG 14067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| || |||||| |||| |||| | || Sbjct 14048 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 13989 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||||| || || || ||| | ||| || ||| Sbjct 13988 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 13929 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || | || ||||||||| Sbjct 13928 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 13869 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || | ||| | ||| Sbjct 13868 ATTCAAAAGGAGTCGACTCTCCACCTTGTG 13839 >seq68691 Length=2609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| |||| |||| | || Sbjct 191 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 250 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | || || ||| Sbjct 251 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 310 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||||| || | || ||||||||| Sbjct 311 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCGCCGACTACAAC 370 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| | ||| Sbjct 371 ATCCAAAAGGAGTCGACTCTCCACCTCGTG 400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || |||||| |||| |||| | || Sbjct 419 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 478 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||||| || || || ||| | ||| || ||| Sbjct 479 GACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 538 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || || || ||||||| | || | || ||||||||| Sbjct 539 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCGCTGACTACAAC 598 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || |||||||||||||| | ||| | || | | |||| || ||||| Sbjct 599 ATCCAAAAGGAGTCTACCCTCCACCTCGTCCTCCGCCTGCGCGGCGGAAA 648 >seq21823 Length=199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGA 107617 ||| || || ||||| ||||| || ||||| |||||||| |||| |||| | |||| Sbjct 199 GCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTGGAGTCCAGCGA 140 Query 107618 TACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCA 107677 || ||| | | || || ||||| || || || ||| | ||| || ||||| Sbjct 139 CACGATCGAGAACCTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCA 80 Query 107678 GAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACAT 107737 | | ||||||| || || || ||||| ||||||| | || | || ||||||||||| Sbjct 79 GCGCCTTATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACAT 20 Query 107738 TCAAAAGGAGTCTAC 107752 || |||||||| || Sbjct 19 CCAGAAGGAGTCGAC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398524787609179